Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   BMR72_RS08760 Genome accession   NZ_CP017969
Coordinates   1793845..1794174 (+) Length   109 a.a.
NCBI ID   WP_003130535.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate B10W     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788845..1799174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMR72_RS08745 (BMR72_08480) - 1789574..1790518 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  BMR72_RS08750 (BMR72_08485) - 1790619..1791644 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  BMR72_RS08755 (BMR72_08490) - 1791657..1793654 (+) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  BMR72_RS08760 (BMR72_08495) comEA/comE1 1793845..1794174 (+) 330 WP_003130535.1 ComEA family DNA-binding protein Machinery gene
  BMR72_RS08770 (BMR72_08505) - 1794391..1795587 (-) 1197 WP_003130537.1 amino acid aminotransferase -
  BMR72_RS08775 (BMR72_08510) uvrB 1795775..1797787 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11411.32 Da        Isoelectric Point: 7.1656

>NTDB_id=172227 BMR72_RS08760 WP_003130535.1 1793845..1794174(+) (comEA/comE1) [Pseudomonas aeruginosa isolate B10W]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEADLIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=172227 BMR72_RS08760 WP_003130535.1 1793845..1794174(+) (comEA/comE1) [Pseudomonas aeruginosa isolate B10W]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGACCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCAGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment