Detailed information NTG0172222

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BMR72_RS06180
• Genome accession: NZ_CP017969
• Coordinates: 1259170..1260174 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate B10W
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1254170..1265174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BMR72_RS06150 (BMR72_05980)	fghA	1254262..1255113 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
BMR72_RS06155 (BMR72_05985)	ispF	1255184..1255657 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BMR72_RS06160 (BMR72_05990)	truD	1255654..1256721 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
BMR72_RS06165 (BMR72_05995)	surE	1256709..1257458 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
BMR72_RS06170 (BMR72_06000)	-	1257491..1258126 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BMR72_RS06175 (BMR72_06005)	-	1258172..1259065 (+)	894	WP_003129949.1	peptidoglycan DD-metalloendopeptidase family protein	-
BMR72_RS06180 (BMR72_06010)	rpoS	1259170..1260174 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
BMR72_RS06185 (BMR72_06015)	fdxA	1260600..1260923 (-)	324	WP_003092272.1	ferredoxin FdxA	-
BMR72_RS06190 (BMR72_06020)	mutS	1260990..1263557 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
BMR72_RS06200 (BMR72_06025)	-	1263683..1264690 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=172222 BMR72_RS06180 WP_003113871.1 1259170..1260174(+) (rpoS) [Pseudomonas aeruginosa isolate B10W]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=172222 BMR72_RS06180 WP_003113871.1 1259170..1260174(+) (rpoS) [Pseudomonas aeruginosa isolate B10W]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653