Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAMY_RS19085 Genome accession   NZ_CP017953
Coordinates   3813146..3813835 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3808146..3818835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS19065 (BAMY_18650) - 3809050..3809397 (-) 348 WP_004393256.1 YxeA family protein -
  BAMY_RS19070 (BAMY_18655) yxdM 3809411..3811279 (-) 1869 WP_004393253.1 ABC transporter permease YxdM -
  BAMY_RS19075 (BAMY_18660) yxdL 3811254..3812027 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  BAMY_RS19080 (BAMY_18665) yxdK 3812172..3813149 (-) 978 WP_004393249.1 two-component system sensor histidine kinase YxdK -
  BAMY_RS19085 (BAMY_18670) braR 3813146..3813835 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  BAMY_RS19090 (BAMY_18675) iolJ 3813943..3814815 (-) 873 WP_004393240.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  BAMY_RS19095 (BAMY_18680) iolI 3814818..3815660 (-) 843 WP_025853683.1 2-keto-myo-inositol isomerase -
  BAMY_RS19100 (BAMY_18685) - 3815748..3816617 (-) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  BAMY_RS19105 (BAMY_18690) - 3816636..3817670 (-) 1035 WP_024086000.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=172200 BAMY_RS19085 WP_004393241.1 3813146..3813835(-) (braR) [Bacillus amyloliquefaciens strain Y14]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=172200 BAMY_RS19085 WP_004393241.1 3813146..3813835(-) (braR) [Bacillus amyloliquefaciens strain Y14]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393