Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BAMY_RS13870 Genome accession   NZ_CP017953
Coordinates   2814278..2815411 (-) Length   377 a.a.
NCBI ID   WP_025853231.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2809278..2820411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS13855 (BAMY_13560) mdh 2809278..2810216 (-) 939 WP_003152455.1 malate dehydrogenase -
  BAMY_RS13860 (BAMY_13565) icd 2810262..2811533 (-) 1272 WP_003152454.1 NADP-dependent isocitrate dehydrogenase -
  BAMY_RS13865 (BAMY_13570) citZ 2811694..2812812 (-) 1119 WP_014305566.1 citrate synthase -
  BAMY_RS20090 - 2813628..2813966 (-) 339 WP_032859290.1 hypothetical protein -
  BAMY_RS20290 - 2814136..2814288 (-) 153 WP_017418344.1 hypothetical protein -
  BAMY_RS13870 (BAMY_13575) rapC 2814278..2815411 (-) 1134 WP_025853231.1 Rap family tetratricopeptide repeat protein Regulator
  BAMY_RS13875 (BAMY_13580) - 2815694..2816131 (-) 438 WP_032859292.1 hypothetical protein -
  BAMY_RS20565 - 2816260..2816373 (-) 114 Protein_2691 peptidoglycan-binding domain-containing protein -
  BAMY_RS13885 (BAMY_13585) - 2816575..2816985 (-) 411 WP_025853235.1 YjdF family protein -
  BAMY_RS20295 - 2817148..2817284 (-) 137 Protein_2693 peptidoglycan-binding domain-containing protein -
  BAMY_RS13895 (BAMY_13590) - 2817409..2817873 (-) 465 WP_003152447.1 DUF441 domain-containing protein -
  BAMY_RS13900 (BAMY_13595) ytvI 2817971..2819086 (+) 1116 WP_003152446.1 sporulation integral membrane protein YtvI -
  BAMY_RS13905 (BAMY_13600) - 2819119..2819502 (-) 384 WP_003152445.1 FxsA family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44934.65 Da        Isoelectric Point: 5.7359

>NTDB_id=172172 BAMY_RS13870 WP_025853231.1 2814278..2815411(-) (rapC) [Bacillus amyloliquefaciens strain Y14]
MDQVLPSSHVGVKINEWYKMIRQFSVPDAEILKAEVENEIKEMEEDEYLLIYYSLMTFRHQLMLDYLNPEIKYRSDRPTT
TELLEKIEKPQKTLTGLLKYYSHFFRGMYEFDQKQYVEAINFYRKAEMEIHHVSDEIEQAEFHFKLAEAYYNMKQTHVSM
HHILKALEIYDRNPLYTVRKIQSLFVIVGNYLDFKHYEKGLQHLKEALKLSQEFGHKRLISSALYNLGESYHYMGQEEKA
EAYLRQAIEIGEEMKLRTLPHSYYSLSIVLFKQKKTAAAGQALKEGLKTAVKYDDNLFCLLTEFLYVLFAEPINKESLEE
ILSKLENIHMYSYVEELTLLTANFFKEMKDFEMATIFYDKMVESQLQIQRGDCLYEY

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=172172 BAMY_RS13870 WP_025853231.1 2814278..2815411(-) (rapC) [Bacillus amyloliquefaciens strain Y14]
ATGGACCAAGTATTACCGTCTTCACATGTAGGCGTTAAAATTAACGAGTGGTACAAGATGATTCGTCAATTTAGTGTGCC
AGACGCGGAAATTTTAAAAGCCGAAGTGGAAAACGAAATAAAAGAAATGGAAGAAGACGAGTATTTACTTATTTATTACT
CGCTCATGACTTTTCGTCATCAACTTATGCTGGATTATCTAAACCCAGAAATAAAGTATAGGTCTGATAGGCCAACCACC
ACAGAACTACTTGAGAAGATTGAGAAACCACAAAAAACACTTACCGGCCTCTTAAAATATTACTCGCATTTTTTTCGTGG
AATGTACGAATTTGATCAGAAGCAATATGTAGAAGCAATTAATTTTTATCGTAAAGCAGAGATGGAAATTCATCATGTCT
CTGATGAAATAGAACAAGCTGAGTTTCATTTTAAGTTGGCAGAGGCTTATTATAATATGAAACAAACGCACGTATCCATG
CATCATATTCTAAAAGCGTTAGAAATTTATGATCGAAATCCGCTTTATACCGTCCGAAAAATTCAAAGTTTATTTGTAAT
TGTGGGTAATTATCTTGATTTTAAACATTACGAAAAAGGATTACAGCATCTTAAGGAAGCCTTGAAGCTTTCGCAAGAAT
TTGGTCATAAAAGGTTGATTTCCTCTGCTCTTTATAATTTGGGTGAAAGTTATCACTACATGGGACAAGAAGAAAAGGCC
GAAGCGTATTTGAGACAAGCAATTGAGATTGGTGAAGAAATGAAATTGAGAACTCTGCCCCATTCATATTATTCACTTTC
CATAGTATTATTTAAACAAAAGAAAACAGCCGCGGCAGGCCAAGCTTTAAAAGAAGGTTTAAAAACAGCAGTAAAATATG
ACGACAATTTGTTTTGCTTATTAACAGAGTTTTTATACGTTTTATTTGCTGAACCCATTAACAAAGAAAGCCTTGAGGAA
ATTTTAAGTAAGCTTGAAAATATTCATATGTATTCGTATGTCGAAGAGTTAACACTTTTAACAGCAAATTTTTTCAAAGA
AATGAAGGACTTTGAAATGGCTACAATTTTTTATGATAAGATGGTGGAGTCTCAACTTCAAATACAGCGGGGGGATTGTT
TGTATGAATATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(197-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.2

99.469

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

39.418

100

0.395