Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAMY_RS03930 Genome accession   NZ_CP017953
Coordinates   748546..749262 (+) Length   238 a.a.
NCBI ID   WP_025854005.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 743546..754262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS03900 (BAMY_03815) - 743724..744101 (+) 378 WP_025854003.1 DUF1992 domain-containing protein -
  BAMY_RS03905 (BAMY_03820) - 744111..744542 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  BAMY_RS03910 (BAMY_03825) - 744558..744800 (-) 243 WP_003155595.1 spore germination protein -
  BAMY_RS03915 (BAMY_03830) - 744815..745075 (-) 261 WP_007408496.1 spore germination protein -
  BAMY_RS03920 (BAMY_03835) treP 745346..746761 (+) 1416 WP_003155593.1 PTS system trehalose-specific EIIBC component -
  BAMY_RS03925 (BAMY_03840) treC 746837..748522 (+) 1686 WP_025854004.1 alpha,alpha-phosphotrehalase -
  BAMY_RS03930 (BAMY_03845) treR 748546..749262 (+) 717 WP_025854005.1 trehalose operon repressor Regulator
  BAMY_RS03935 (BAMY_03850) - 749396..750061 (+) 666 WP_071543306.1 NAD(P)H-dependent oxidoreductase -
  BAMY_RS03940 (BAMY_03855) - 750097..750858 (-) 762 WP_003155586.1 YibE/F family protein -
  BAMY_RS03945 (BAMY_03860) - 750855..751994 (-) 1140 WP_025854008.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27424.49 Da        Isoelectric Point: 7.8941

>NTDB_id=172087 BAMY_RS03930 WP_025854005.1 748546..749262(+) (treR) [Bacillus amyloliquefaciens strain Y14]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTVAGEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=172087 BAMY_RS03930 WP_025854005.1 748546..749262(+) (treR) [Bacillus amyloliquefaciens strain Y14]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGCGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGTGGCGGGTGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42