Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   BLD43_RS08940 Genome accession   NZ_CP017875
Coordinates   1715464..1716060 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain ZV1224     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710464..1721060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD43_RS08920 (BLD43_08920) - 1711219..1711983 (+) 765 WP_002781156.1 TIGR02757 family protein -
  BLD43_RS08925 (BLD43_08925) - 1711986..1712750 (+) 765 WP_002781157.1 TSUP family transporter -
  BLD43_RS08930 (BLD43_08930) ctsF 1712747..1713922 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  BLD43_RS08935 (BLD43_08935) ctsE 1713909..1715471 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  BLD43_RS08940 (BLD43_08940) ctsX 1715464..1716060 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  BLD43_RS08945 (BLD43_08945) ctsP 1716057..1716653 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  BLD43_RS08950 (BLD43_08950) ctsD 1716646..1718064 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD43_RS08955 (BLD43_08955) ctsR 1718042..1718353 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=172010 BLD43_RS08940 WP_002779313.1 1715464..1716060(-) (ctsX) [Campylobacter coli strain ZV1224]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=172010 BLD43_RS08940 WP_002779313.1 1715464..1716060(-) (ctsX) [Campylobacter coli strain ZV1224]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCTATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434