Detailed information NTG0172004

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BLD43_RS07225
• Genome accession: NZ_CP017875
• Coordinates: 1393545..1396118 (+)
• Length: 857 a.a.
• NCBI ID: WP_002806769.1
• Uniprot ID: -
• Organism: Campylobacter coli strain ZV1224
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1388545..1401118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLD43_RS07195 (BLD43_07195)	-	1388842..1389954 (-)	1113	WP_233346113.1	SH3 domain-containing protein	-
BLD43_RS07200 (BLD43_07200)	purQ	1389986..1390682 (-)	697	Protein_1408	phosphoribosylformylglycinamidine synthase I	-
BLD43_RS07205 (BLD43_07205)	purS	1390682..1390927 (-)	246	WP_002776055.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
BLD43_RS07210 (BLD43_07210)	purC	1390936..1391646 (-)	711	WP_002776052.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
BLD43_RS07215 (BLD43_07215)	-	1391649..1392986 (-)	1338	WP_032703864.1	S41 family peptidase	-
BLD43_RS07220 (BLD43_07220)	-	1393129..1393410 (+)	282	WP_002779742.1	metal-sensing transcriptional repressor	-
BLD43_RS07225 (BLD43_07225)	clpC	1393545..1396118 (+)	2574	WP_002806769.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
BLD43_RS07230 (BLD43_07230)	-	1396161..1398092 (-)	1932	WP_002779740.1	penicillin-binding protein 1A	-
BLD43_RS07235 (BLD43_07235)	maf	1398089..1398640 (-)	552	WP_002779739.1	septum formation inhibitor Maf	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95564.54 Da
• Isoelectric Point: 5.2845

>NTDB_id=172004 BLD43_RS07225 WP_002806769.1 1393545..1396118(+) (clpC) [Campylobacter coli strain ZV1224]
MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDSSSILNQICNKFNISKEALELEIKSRISNLATSSNVN
RENVRFSNEFINSLESAKGLMSANGDNYLSIDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKARKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQSALNSQFENEKAVFDSISAKKKEID
SLKNEAVFAKNKGEFQKAAELEYGKIPECEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNILLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEKA

Nucleotide

• Length: 2574 bp

>NTDB_id=172004 BLD43_RS07225 WP_002806769.1 1393545..1396118(+) (clpC) [Campylobacter coli strain ZV1224]
ATGGCAAATATACAAGAATTTTTAACCGACAATATGCTTTCAAACCTTGAAAGTGCAGCGTCTTTGGCGATTCATTCTAA
AAATAATGAAGTTGTCCCTTTACATCTTTTATGGGCTTTAATTGTAGACAGTTCAAGTATTTTAAATCAAATTTGTAATA
AATTTAATATTTCAAAAGAAGCTTTAGAACTTGAAATCAAAAGCAGAATTTCAAATCTTGCAACAAGCTCTAATGTCAAT
CGTGAAAATGTGCGTTTTTCTAATGAATTTATCAATTCCTTAGAAAGTGCTAAAGGACTTATGAGTGCCAATGGTGATAA
TTACTTAAGTATAGATACTTGGCTTATAAGCGAAAGCGAAAAAAATCCTATTAGAGAAATTTTAGCCAAATTTATAGATA
TTAAAGAATTTCAAAAAGAGCTCCAAAATTTAAGAGCAGGACGCAAAATCGAAAGCAAAACAAGTGATGAAACCCTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCGCAAAAGCAAGTGAAGGAAAGCTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGCTTAATGCAAATTCTTATACGCAAAACAAAAAACAACCCTATACTTTTAGGTGAACCAGGAGTAGGAAAAA
CAGCGATCGTAGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTGCCAAAATCTTTACAAAATAAAAAAGTCATAGCT
CTTGATATGAGTGCATTGATCGCAGGAGCAAAATATCGTGGAGAATTTGAAGATAGATTAAAAGCGGTGGTAAATGAGGT
CATTAAAAGTGAAAATATCATACTTTTTATCGATGAAATTCACACCATAGTAGGCGCAGGAGCAAGCGAAGGAAGTATGG
ATGCTGCAAATATTTTAAAGCCGGCACTTGCAAGAGGCGAACTTCACACCATAGGAGCAACCACTCTTAAAGAATATCGT
AAATACTTTGAAAAAGATGCGGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGCGAACCTAGCGTAAATGAAGCTTT
AGCAATGCTAAGGGGTATTAAAGAAAAACTTGAAATTCATCACAATGTCACCATCAATGATAGTGCTTTAGTAGCGGCAG
CTAAGCTTTCAAAACGCTATATTGCCGATCGTTTTTTACCCGATAAAGCAATTGATTTAATCGATGAAGCTGCGGCTGAA
CTTAAAATGCAAATTGAAAGCGAACCAAGCTCTTTGAGAAAGGCACGCAAAGACATAGAAACTTTAGAAGTAGAAAATGA
AGCTCTAAAGATGGAAAATGATGAAAAAAATCAAAAAAGACTAGATGAAATTGCCAAAGAACTGGCCAATTTAAAAGAAA
AACAAAGTGCTTTAAATTCACAATTTGAAAATGAAAAAGCAGTTTTTGATAGCATAAGCGCAAAGAAAAAAGAAATCGAT
AGTCTTAAAAACGAAGCTGTTTTTGCAAAAAATAAGGGTGAATTCCAAAAAGCTGCAGAATTAGAATATGGCAAAATTCC
AGAATGCGAAAAAGAAGTGGCAAATTTAGAAGAAAAATGGAAAAAAATGAGCGAAAATGGAGTCTTGCTTAAAAATCAAG
TGGATGAAGATTTGGTTGCTGGAATTTTAAGCAAATGGACAGGAATTAGCGTGCAAAAAATGCTGACTTCAGAGAAGCAA
AAATTTTTGGAAGTAGAAAAACACTTAAAAGAAAGTGTGATTGGGCAAGATAAGGCTCTAAGCGCTTTAGCAAGAGCTAT
CAAACGCAATAAAGCAGGATTAAATGCAGACAATAAGCCTATAGGAAGCTTTTTATTTTTAGGGCCTACAGGAGTAGGAA
AAACACAATCTGCTAAGGCTTTGGCGAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGCGTTTCAAGACTCTTAGGAGCGCCTCCAGGTTATGTAGGGCATGAAGAAGGCGGAGAGCTTACTGA
AGCGGTGCGTAGAAAACCTTATAGCGTGCTTTTATTTGATGAAGTCGAAAAAGCCCACAAGGATGTGTTTAATATACTTT
TAGGAATTTTAGACGATGGTAGGGCAACTGATAGCAAGGGTGTAACTGTGGATTTTAAAAATACCATTATTATTTTAACT
TCTAATATCGCCTCAAGTGCTATCATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAATTTTTAAACCGCTTAGACGATATCATCACCTTTAATCCACTTGGAAAAGATGAGGCATATGAGATAG
TTAAACTTTTATTTAAAGACTTGCAAAAAAGTTTGGAAAATAAGGGTATAAAAGCAAGTCTTAGTGAAAATGCTGCGCTT
TTAATCGCTAAGGACGGATTTGATCCTGACTTTGGTGCTAGACCTTTAAGAAGGGCTATTTATGATTTAATCGAAGACAA
GCTAAGCGATATGATACTTGCAGACAAGCTTAATGAAAATGATGAGATTGTTATCGATGCAAAAAATGATGAGATTGTTA
TCGAAAAAGCTTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• AAA lid domain (AAA_lid_9) (342-444)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.611	99.533	0.434
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.581	100	0.424