Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BLD43_RS06700 Genome accession   NZ_CP017875
Coordinates   1282199..1282579 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain ZV1224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277199..1287579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD43_RS06675 (BLD43_06675) aspS 1277712..1279463 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  BLD43_RS06680 (BLD43_06680) - 1279460..1280035 (+) 576 WP_002781658.1 adenylate kinase -
  BLD43_RS06685 (BLD43_06685) ppa 1280045..1280563 (+) 519 WP_002776378.1 inorganic diphosphatase -
  BLD43_RS06690 (BLD43_06690) msrA 1280611..1281111 (+) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BLD43_RS06695 (BLD43_06695) - 1281334..1282188 (-) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BLD43_RS06700 (BLD43_06700) dprB 1282199..1282579 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  BLD43_RS06705 (BLD43_06705) dprA 1282576..1283346 (-) 771 WP_002815152.1 DNA-processing protein DprA Machinery gene
  BLD43_RS06710 (BLD43_06710) - 1283336..1284388 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  BLD43_RS06715 (BLD43_06715) ilvC 1284391..1285413 (-) 1023 WP_002806714.1 ketol-acid reductoisomerase -
  BLD43_RS06720 (BLD43_06720) - 1285536..1287470 (+) 1935 WP_071315171.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=172000 BLD43_RS06700 WP_002776373.1 1282199..1282579(-) (dprB) [Campylobacter coli strain ZV1224]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=172000 BLD43_RS06700 WP_002776373.1 1282199..1282579(-) (dprB) [Campylobacter coli strain ZV1224]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment