Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AY601_RS19740 Genome accession   NZ_CP014504
Coordinates   4710126..4711502 (+) Length   458 a.a.
NCBI ID   WP_068404300.1    Uniprot ID   A0A127VIW4
Organism   Pedobacter cryoconitis strain PAMC 27485     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4705126..4716502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AY601_RS19715 (AY601_3991) - 4705290..4705715 (-) 426 WP_041883024.1 single-stranded DNA-binding protein -
  AY601_RS19720 (AY601_3992) mutY 4705730..4706779 (-) 1050 WP_068404295.1 A/G-specific adenine glycosylase -
  AY601_RS19725 (AY601_3993) - 4707039..4707341 (+) 303 WP_041883022.1 HU family DNA-binding protein -
  AY601_RS19730 (AY601_3994) - 4707349..4708212 (+) 864 WP_068404297.1 tetratricopeptide repeat protein -
  AY601_RS19735 (AY601_3996) - 4708467..4710017 (+) 1551 WP_068404299.1 Rne/Rng family ribonuclease -
  AY601_RS19740 (AY601_3997) radA 4710126..4711502 (+) 1377 WP_068404300.1 DNA repair protein RadA Machinery gene
  AY601_RS19745 (AY601_3998) - 4711611..4713584 (+) 1974 WP_068404302.1 KUP/HAK/KT family potassium transporter -
  AY601_RS19750 (AY601_3999) - 4713731..4715026 (+) 1296 WP_068404304.1 M57 family metalloprotease -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50004.31 Da        Isoelectric Point: 6.1256

>NTDB_id=171995 AY601_RS19740 WP_068404300.1 4710126..4711502(+) (radA) [Pedobacter cryoconitis strain PAMC 27485]
MAKTKSAYFCQSCGYESAKWLGKCPSCNSWNTFVEEVIEKPGASVPAWQTSGSTKRSNKPNKITNIAFSEENKLSTNDLE
LDRVLGGGLVAGSVVLIGGEPGIGKSTLMLQLALNITGKKVLYVSGEESEQQIKMRAERITSNPTADCYILTETSTQNIF
KQIEVLEPDIIVVDSIQTLHSAHIDSTPGSVSQVRECTAELLRFAKETDTPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYAMHSGGLRQVSNPSEILLSQRDEELSGIAIAATLEGARPMLIETQALVSTAAY
GTPQRSATGFDTRRMNMLLAVLEKRCGFRLSTRDVFLNIAGGIKVEDPAIDLAILAAIISSHEDIFISSKICFAAEVGLS
GEIRAVNRIEQRIAEADKLGFERIFVSNYNLKGLITDKYKLEITGVNKIEDVFSLLFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=171995 AY601_RS19740 WP_068404300.1 4710126..4711502(+) (radA) [Pedobacter cryoconitis strain PAMC 27485]
TTGGCTAAAACTAAATCAGCATATTTCTGTCAGAGTTGTGGGTATGAATCAGCCAAGTGGCTTGGAAAATGCCCATCCTG
TAATTCCTGGAATACTTTCGTAGAGGAAGTTATTGAAAAACCAGGAGCCAGTGTTCCTGCATGGCAAACATCCGGTTCTA
CGAAAAGATCCAATAAACCTAACAAGATTACCAACATTGCGTTTTCTGAGGAAAATAAGCTCTCCACCAATGATCTTGAA
CTCGACCGGGTACTAGGTGGTGGTTTAGTGGCCGGATCTGTAGTTTTAATCGGAGGTGAACCGGGTATAGGTAAATCAAC
ACTGATGCTGCAACTTGCCTTAAACATTACCGGAAAGAAAGTACTCTATGTTTCAGGCGAAGAAAGTGAACAGCAGATTA
AAATGCGCGCAGAAAGGATTACCAGTAATCCAACCGCAGACTGTTATATCCTTACTGAAACCTCCACACAGAATATCTTT
AAGCAAATTGAGGTGCTTGAACCCGATATTATTGTAGTAGATTCCATCCAGACACTTCATTCTGCACATATTGATTCTAC
ACCAGGCAGTGTTTCTCAAGTAAGGGAATGTACTGCTGAATTGCTGCGTTTCGCCAAAGAAACGGATACTCCGGTCTTTT
TAATCGGTCATATTACCAAAGATGGAGCGATTGCGGGGCCTAAAATCCTGGAACACATGGTTGACACCGTTTTACAATTT
GAAGGCGACAGACATCATGTTTACAGAATTCTACGTTCTATTAAAAACAGATTTGGTGCCGCAGCAGAATTAGGCATTTA
TGCCATGCACAGCGGTGGGCTCAGACAAGTTTCCAATCCTTCGGAAATTTTGCTTTCTCAAAGAGATGAGGAATTAAGTG
GTATTGCCATTGCAGCGACTCTTGAGGGTGCAAGGCCAATGTTAATTGAAACACAGGCCTTGGTTAGCACTGCAGCTTAC
GGAACGCCTCAGCGTTCAGCTACGGGCTTTGATACCCGAAGAATGAATATGCTCCTTGCCGTACTGGAAAAGCGATGTGG
CTTTAGGTTAAGTACAAGAGATGTATTCTTAAATATTGCTGGTGGGATTAAAGTGGAAGATCCTGCAATTGACCTTGCGA
TTCTTGCGGCCATTATTTCATCACATGAGGATATTTTCATCTCTTCAAAAATTTGTTTTGCGGCAGAAGTTGGTTTATCA
GGAGAAATCCGCGCAGTAAACAGAATAGAACAGCGGATTGCTGAAGCTGACAAGCTGGGATTTGAAAGGATTTTTGTTTC
TAATTATAATTTAAAAGGGCTGATTACAGATAAATATAAACTGGAGATTACAGGCGTGAACAAAATTGAAGATGTCTTTT
CATTATTGTTCGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127VIW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.061

100

0.524
  radA Streptococcus mitis NCTC 12261

49.127

100

0.491
  radA Streptococcus mitis SK321

49.127

100

0.491
  radA Streptococcus pneumoniae Rx1

48.908

100

0.489
  radA Streptococcus pneumoniae D39

48.908

100

0.489
  radA Streptococcus pneumoniae R6

48.908

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.908

100

0.489

Multiple sequence alignment