Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   BLD43_RS02415 Genome accession   NZ_CP017875
Coordinates   446931..447527 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain ZV1224     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441931..452527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD43_RS02400 (BLD43_02400) ctsR 444638..444949 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  BLD43_RS02405 (BLD43_02405) ctsD 444927..446345 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD43_RS02410 (BLD43_02410) ctsP 446338..446934 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  BLD43_RS02415 (BLD43_02415) ctsX 446931..447527 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  BLD43_RS02420 (BLD43_02420) ctsE 447520..449082 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  BLD43_RS02425 (BLD43_02425) ctsF 449069..450244 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  BLD43_RS02430 (BLD43_02430) - 450241..451005 (-) 765 WP_002781157.1 TSUP family transporter -
  BLD43_RS02435 (BLD43_02435) - 451008..451772 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=171972 BLD43_RS02415 WP_002779313.1 446931..447527(+) (ctsX) [Campylobacter coli strain ZV1224]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=171972 BLD43_RS02415 WP_002779313.1 446931..447527(+) (ctsX) [Campylobacter coli strain ZV1224]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCTATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434