Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BLD33_RS03280 Genome accession   NZ_CP017873
Coordinates   631984..632532 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain WA333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 626984..637532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD33_RS03250 (BLD33_03250) ctsT 627027..627332 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  BLD33_RS03255 (BLD33_03255) proC 627329..628066 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  BLD33_RS03260 (BLD33_03260) fliW 628066..628455 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  BLD33_RS03265 (BLD33_03265) - 628619..629266 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  BLD33_RS03270 (BLD33_03270) lon 629282..631657 (+) 2376 WP_002777089.1 endopeptidase La -
  BLD33_RS03275 (BLD33_03275) rpsR 631713..631973 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  BLD33_RS03280 (BLD33_03280) ssb 631984..632532 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  BLD33_RS03285 (BLD33_03285) rpsF 632541..632918 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  BLD33_RS03290 (BLD33_03290) - 633197..634468 (+) 1272 WP_002777080.1 MFS transporter -
  BLD33_RS03295 (BLD33_03295) - 634468..635469 (+) 1002 WP_071305102.1 sugar phosphate isomerase/epimerase -
  BLD33_RS03300 (BLD33_03300) - 635462..636102 (-) 641 Protein_648 DUF535 family protein -
  BLD33_RS10520 - 636066..636317 (-) 252 WP_048813181.1 hypothetical protein -
  BLD33_RS03305 (BLD33_03305) rseP 636314..637417 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=171940 BLD33_RS03280 WP_002777084.1 631984..632532(-) (ssb) [Campylobacter coli strain WA333]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=171940 BLD33_RS03280 WP_002777084.1 631984..632532(-) (ssb) [Campylobacter coli strain WA333]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379