Detailed information NTG0171908

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BLD39_RS07080
• Genome accession: NZ_CP017871
• Coordinates: 1354488..1357061 (+)
• Length: 857 a.a.
• NCBI ID: WP_002779741.1
• Uniprot ID: A0ABP2NS93
• Organism: Campylobacter coli strain BP3183
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1349488..1362061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLD39_RS07050 (BLD39_07050)	-	1349793..1350905 (-)	1113	WP_395941762.1	hypothetical protein	-
BLD39_RS07055 (BLD39_07055)	purQ	1350937..1351633 (-)	697	Protein_1382	phosphoribosylformylglycinamidine synthase I	-
BLD39_RS07060 (BLD39_07060)	purS	1351633..1351878 (-)	246	WP_002776055.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
BLD39_RS07065 (BLD39_07065)	purC	1351887..1352597 (-)	711	WP_002776052.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
BLD39_RS07070 (BLD39_07070)	-	1352603..1353937 (-)	1335	WP_002788201.1	S41 family peptidase	-
BLD39_RS07075 (BLD39_07075)	-	1354064..1354354 (+)	291	WP_002788199.1	metal-sensing transcriptional repressor	-
BLD39_RS07080 (BLD39_07080)	clpC	1354488..1357061 (+)	2574	WP_002779741.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
BLD39_RS07085 (BLD39_07085)	-	1357104..1359035 (-)	1932	WP_002779740.1	penicillin-binding protein 1A	-
BLD39_RS07090 (BLD39_07090)	maf	1359032..1359583 (-)	552	WP_002779739.1	septum formation inhibitor Maf	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95550.51 Da
• Isoelectric Point: 5.2845

>NTDB_id=171908 BLD39_RS07080 WP_002779741.1 1354488..1357061(+) (clpC) [Campylobacter coli strain BP3183]
MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDSSSILNQICNKFNISKEALELEIKSRISNLATSSNVN
RENVRFSNEFINSLESAKGLMSANGDNYLSVDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKARKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQSALNSQFENEKAVFDSISAKKKEID
SLKNEAVFAKNKGEFQKAAELEYGKIPECEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNILLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEKA

Nucleotide

• Length: 2574 bp

>NTDB_id=171908 BLD39_RS07080 WP_002779741.1 1354488..1357061(+) (clpC) [Campylobacter coli strain BP3183]
ATGGCAAATATACAAGAATTTTTAACCGACAATATGCTTTCAAACCTTGAAAGTGCAGCGTCTTTGGCGATTCATTCTAA
AAATAATGAAGTTGTCCCTTTACATCTTTTATGGGCTTTAATTGTAGACAGTTCAAGTATTTTAAATCAAATTTGTAATA
AATTTAATATTTCAAAAGAAGCTTTAGAACTTGAAATCAAAAGCAGAATTTCAAATCTTGCAACAAGCTCTAATGTCAAT
CGTGAAAATGTGCGTTTTTCTAATGAATTTATCAATTCCTTAGAAAGTGCTAAAGGACTTATGAGTGCCAATGGTGATAA
TTACTTAAGTGTAGATACTTGGCTTATAAGCGAAAGCGAAAAAAATCCTATTAGAGAAATTTTAGCCAAATTTATAGATA
TTAAAGAATTTCAAAAAGAGCTCCAAAATTTAAGAGCAGGACGCAAAATCGAAAGCAAAACAAGTGATGAAACCCTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCGCAAAAGCAAGTGAAGGAAAGCTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGCTTAATGCAAATTCTTATACGCAAAACAAAAAACAACCCTATACTTTTAGGTGAACCAGGAGTAGGAAAAA
CAGCGATCGTAGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTGCCAAAATCTTTACAAAATAAAAAAGTCATAGCT
CTTGATATGAGTGCATTGATCGCAGGAGCAAAATATCGTGGAGAATTTGAAGATAGATTAAAAGCGGTGGTAAATGAGGT
CATTAAAAGTGAAAATATCATACTTTTTATCGATGAAATTCACACCATAGTAGGCGCAGGAGCAAGCGAAGGAAGTATGG
ATGCTGCAAATATTTTAAAGCCGGCACTTGCAAGAGGCGAACTTCACACCATAGGAGCAACCACTCTTAAAGAATATCGT
AAATACTTTGAAAAAGATGCGGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGCGAACCTAGCGTAAATGAAGCTTT
AGCAATGCTAAGGGGTATTAAAGAAAAACTTGAAATTCATCACAATGTCACCATCAATGATAGTGCTTTAGTAGCGGCAG
CTAAGCTTTCAAAACGCTATATTGCCGATCGTTTTTTACCCGATAAAGCAATTGATTTAATCGATGAAGCTGCGGCTGAA
CTTAAAATGCAAATTGAAAGCGAACCAAGCTCTTTGAGAAAGGCACGCAAAGACATAGAAACTTTAGAAGTAGAAAATGA
AGCTCTAAAGATGGAAAATGATGAAAAAAATCAAAAAAGACTAGATGAAATTGCCAAAGAACTGGCCAATTTAAAAGAAA
AACAAAGTGCTTTAAATTCACAATTTGAAAATGAAAAAGCAGTTTTTGATAGCATAAGCGCAAAGAAAAAAGAAATCGAT
AGTCTTAAAAACGAAGCTGTTTTTGCAAAAAATAAGGGTGAATTCCAAAAAGCTGCAGAATTAGAATATGGCAAAATTCC
AGAATGCGAAAAAGAAGTGGCAAATTTAGAAGAAAAATGGAAAAAAATGAGCGAAAATGGAGTCTTGCTTAAAAATCAAG
TGGATGAAGATTTGGTTGCTGGAATTTTAAGCAAATGGACAGGAATTAGCGTGCAAAAAATGCTGACTTCAGAGAAGCAA
AAATTTTTGGAAGTAGAAAAACACTTAAAAGAAAGTGTGATTGGGCAAGATAAGGCTCTAAGCGCTTTAGCAAGAGCTAT
CAAACGCAATAAAGCAGGATTAAATGCAGACAATAAGCCTATAGGAAGCTTTTTATTTTTAGGGCCTACAGGAGTAGGAA
AAACACAATCTGCTAAGGCTTTGGCGAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGCGTTTCAAGACTCTTAGGAGCGCCTCCAGGTTATGTAGGGCATGAAGAAGGCGGAGAGCTTACTGA
AGCGGTGCGTAGAAAACCTTATAGCGTGCTTTTATTTGATGAAGTCGAAAAAGCCCACAAGGATGTGTTTAATATACTTT
TAGGAATTTTAGACGATGGTAGGGCAACTGATAGCAAGGGTGTAACTGTGGATTTTAAAAATACCATTATTATTTTAACT
TCTAATATCGCCTCAAGTGCTATCATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAATTTTTAAACCGCTTAGACGATATCATCACCTTTAATCCACTTGGAAAAGATGAGGCATATGAGATAG
TTAAACTTTTATTTAAAGACTTGCAAAAAAGTTTGGAAAATAAGGGTATAAAAGCAAGTCTTAGTGAAAATGCTGCGCTT
TTAATCGCTAAGGACGGATTTGATCCTGACTTTGGTGCTAGACCTTTAAGAAGGGCTATTTATGATTTAATCGAAGACAA
GCTAAGCGATATGATACTTGCAGACAAGCTTAATGAAAATGATGAGATTGTTATCGATGCAAAAAATGATGAGATTGTTA
TCGAAAAAGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• AAA lid domain (AAA_lid_9) (342-444)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.611	99.533	0.434
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.581	100	0.424