Detailed information NTG0171860

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AYJ52_RS13485
• Genome accession: NZ_CP014477
• Coordinates: 2886036..2886791 (+)
• Length: 251 a.a.
• NCBI ID: WP_017386829.1
• Uniprot ID: A0A1C2UFW7
• Organism: Acinetobacter pittii strain AP_882
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2881036..2891791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYJ52_RS13450 (AYJ52_13450)	kdsB	2881562..2882323 (+)	762	WP_017386826.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AYJ52_RS13455 (AYJ52_13455)	holB	2882337..2883317 (+)	981	WP_017386827.1	DNA polymerase III subunit delta'	-
AYJ52_RS13460 (AYJ52_13460)	pilZ	2883328..2883669 (+)	342	WP_002121335.1	PilZ domain-containing protein	-
AYJ52_RS13465 (AYJ52_13465)	ycfH	2883687..2884460 (+)	774	WP_017386828.1	TatD family hydrolase	-
AYJ52_RS13470 (AYJ52_13470)	-	2884497..2885105 (+)	609	WP_014206595.1	TetR/AcrR family transcriptional regulator	-
AYJ52_RS13475 (AYJ52_13475)	-	2885112..2885666 (+)	555	WP_002121405.1	type II secretion system protein	-
AYJ52_RS13480 (AYJ52_13480)	xcpV	2885656..2886036 (+)	381	WP_002121425.1	type II secretion system minor pseudopilin GspI	Machinery gene
AYJ52_RS13485 (AYJ52_13485)	xcpW	2886036..2886791 (+)	756	WP_017386829.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AYJ52_RS13490 (AYJ52_13490)	gspK	2886792..2887751 (+)	960	WP_017386830.1	type II secretion system minor pseudopilin GspK	-
AYJ52_RS13495 (AYJ52_13495)	-	2887980..2888576 (+)	597	WP_017386831.1	6-pyruvoyl trahydropterin synthase family protein	-
AYJ52_RS13500 (AYJ52_13500)	ung	2888630..2889343 (+)	714	WP_005069527.1	uracil-DNA glycosylase	-
AYJ52_RS13505 (AYJ52_13505)	hibch	2889340..2890464 (+)	1125	WP_014206599.1	enoyl-CoA hydratase/isomerase family protein	-
AYJ52_RS13510 (AYJ52_13510)	tadA	2890470..2890973 (+)	504	WP_002121378.1	tRNA adenosine(34) deaminase TadA	-
AYJ52_RS13515 (AYJ52_13515)	-	2891044..2891484 (+)	441	WP_017386832.1	SRPBCC family protein	-

Sequence

Protein

• Length: 251 a.a.
• Molecular weight: 28862.11 Da
• Isoelectric Point: 9.5667

>NTDB_id=171860 AYJ52_RS13485 WP_017386829.1 2886036..2886791(+) (xcpW) [Acinetobacter pittii strain AP_882]
MIKNKCFRYSSTASRLAARSEQMMRGYSEQSSSSCAQTKLRFVNPRSGFTLVELLVSIAIFAILSLLGWKVFDYLLKVRD
RNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEIDNQVLRFSKAGVTDPLKQGLSPFERIEYRYDPDQKKL
YRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLTPQEVIKWPEVNIDPTKPDEFRKLPKGIKMQLTVAGVSYEWIYSLNQ
GDLSLSKQGDQ

Nucleotide

• Length: 756 bp

>NTDB_id=171860 AYJ52_RS13485 WP_017386829.1 2886036..2886791(+) (xcpW) [Acinetobacter pittii strain AP_882]
ATGATAAAGAATAAATGTTTTCGCTATTCAAGCACCGCTTCACGTCTTGCGGCACGATCGGAGCAGATGATGAGGGGTTA
CTCCGAGCAAAGCTCTTCGTCTTGCGCTCAGACAAAGCTTCGCTTTGTTAATCCTCGCTCAGGATTTACTTTAGTTGAGC
TTTTAGTTTCAATTGCAATTTTTGCTATTTTATCTTTGTTGGGTTGGAAGGTTTTTGACTATTTATTAAAAGTTCGTGAT
CGTAATACTCAACATGAAGTGCAGCTATTTGAATTACAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTAT
ACCTTTATCAGCCAATCAAGGCGGGCAATTACGTCCAGCTTTAGAAATTGATAATCAAGTTCTCCGCTTTAGTAAGGCGG
GTGTTACTGATCCATTAAAGCAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTT
TATCGCCTTAAATATAGTAACTTAAATACTTCAAATAGAGAGCAACCCTTATCAAGTACGCTGTTGAGCCAAGTTGAACA
ATTTCAAATTATGGTTTTGACACCTCAAGAAGTAATAAAGTGGCCTGAAGTTAATATTGACCCTACAAAACCTGATGAAT
TTAGGAAGTTGCCAAAAGGAATAAAAATGCAACTCACGGTTGCAGGTGTAAGTTATGAGTGGATTTATAGCTTAAACCAA
GGTGACTTATCGCTCTCCAAACAGGGAGATCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (101-230)

• Prokaryotic N-terminal methylation motif (N_methyl) (45-67)

3D structure

• AlphaFold DB: A0A1C2UFW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	79.6	99.602	0.793