Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AYJ52_RS06400 Genome accession   NZ_CP014477
Coordinates   1362491..1364059 (-) Length   522 a.a.
NCBI ID   WP_017385868.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP_882     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357491..1369059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS06385 (AYJ52_06385) gpmI 1358304..1359851 (+) 1548 WP_017385866.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AYJ52_RS06390 (AYJ52_06390) ctpA 1359867..1361051 (+) 1185 WP_014208171.1 S41 family peptidase -
  AYJ52_RS06395 (AYJ52_06395) pilR 1361055..1362467 (-) 1413 WP_017385867.1 sigma-54-dependent transcriptional regulator Regulator
  AYJ52_RS06400 (AYJ52_06400) pilS 1362491..1364059 (-) 1569 WP_017385868.1 sensor histidine kinase Regulator
  AYJ52_RS06405 (AYJ52_06405) gacA 1364070..1364705 (-) 636 WP_002121174.1 response regulator -
  AYJ52_RS06410 (AYJ52_06410) pbpG 1364918..1365964 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AYJ52_RS06415 (AYJ52_06415) thrC 1366069..1367208 (-) 1140 WP_002048893.1 threonine synthase -
  AYJ52_RS06420 (AYJ52_06420) hom 1367263..1368564 (-) 1302 WP_002121263.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59089.61 Da        Isoelectric Point: 6.1805

>NTDB_id=171841 AYJ52_RS06400 WP_017385868.1 1362491..1364059(-) (pilS) [Acinetobacter pittii strain AP_882]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGRQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLFDVK
GSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=171841 AYJ52_RS06400 WP_017385868.1 1362491..1364059(-) (pilS) [Acinetobacter pittii strain AP_882]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTCTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTGCCACTCAGGCAACCAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCCAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCATTCTTATTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGTTATTTAGTCC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAGGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTGGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAACCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGCAGGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAATGACTTCTTAAAAACGTTATTAGATGAAGATTTATTTGATGTTAAA
GGTTCGATACAGCTTAAAATTTCCGATTCATCTTTAAAACTCTTATTCGATGAAAAGCAACTCAGACAAGTGTTAATTAA
CCTTGTTAGGAATGCTTTACGGCACAATGCTCCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

95.019

100

0.95

Multiple sequence alignment