Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AYJ52_RS02430 Genome accession   NZ_CP014477
Coordinates   534351..535235 (-) Length   294 a.a.
NCBI ID   WP_017386969.1    Uniprot ID   A0A009HQQ5
Organism   Acinetobacter pittii strain AP_882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529351..540235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS02415 (AYJ52_02415) miaB 531235..532686 (+) 1452 WP_017386966.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AYJ52_RS02420 (AYJ52_02420) phoL 532724..533812 (+) 1089 WP_017386967.1 PhoH family protein -
  AYJ52_RS02425 (AYJ52_02425) ybeY 533822..534298 (+) 477 WP_017386968.1 rRNA maturation RNase YbeY -
  AYJ52_RS02430 (AYJ52_02430) tonB2 534351..535235 (-) 885 WP_017386969.1 energy transducer TonB Machinery gene
  AYJ52_RS02435 (AYJ52_02435) - 535468..536139 (+) 672 WP_017386970.1 hypothetical protein -
  AYJ52_RS02440 (AYJ52_02440) - 536298..537011 (+) 714 WP_014207724.1 DUF3108 domain-containing protein -
  AYJ52_RS02445 (AYJ52_02445) xpt 537084..537659 (+) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  AYJ52_RS02450 (AYJ52_02450) wrbA 537711..538313 (-) 603 WP_079381004.1 NAD(P)H:quinone oxidoreductase -
  AYJ52_RS02455 (AYJ52_02455) - 538674..539921 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33698.21 Da        Isoelectric Point: 7.6439

>NTDB_id=171819 AYJ52_RS02430 WP_017386969.1 534351..535235(-) (tonB2) [Acinetobacter pittii strain AP_882]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPRLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTIDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=171819 AYJ52_RS02430 WP_017386969.1 534351..535235(-) (tonB2) [Acinetobacter pittii strain AP_882]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTGGCACAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGAGGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAGCAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGTCAAAGAAAAAAAGAATTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAATCGATGGAATTCAAGCGAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCACCATTCGGGCATTTTGA
TGCGAATATGAAAGATATTTCAGAGTTGCGTATTGTACGTACTTGGCGTTTTGATCCAGCGGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HQQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878

Multiple sequence alignment