Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AWV81_RS12445 Genome accession   NZ_CP014471
Coordinates   2307958..2308761 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2302958..2313761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS12420 (AWV81_12415) yqxC 2303068..2303913 (+) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  AWV81_RS12425 (AWV81_12420) argR 2304011..2304460 (+) 450 WP_003230265.1 arginine repressor ArgR -
  AWV81_RS12430 (AWV81_12425) recN 2304497..2306227 (+) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  AWV81_RS12435 (AWV81_12430) spoIVB 2306402..2307682 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  AWV81_RS12445 (AWV81_12440) spo0A 2307958..2308761 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AWV81_RS12455 (AWV81_12450) yqiG 2309226..2310344 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  AWV81_RS23095 (AWV81_12455) - 2310417..2310569 (-) 153 WP_014480226.1 hypothetical protein -
  AWV81_RS12465 (AWV81_12460) - 2310877..2311173 (+) 297 WP_014480225.1 hypothetical protein -
  AWV81_RS12470 (AWV81_12465) yqiI 2311193..2311813 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  AWV81_RS12475 (AWV81_12470) glpQB 2311892..2312623 (+) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=171725 AWV81_RS12445 WP_003226427.1 2307958..2308761(+) (spo0A) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=171725 AWV81_RS12445 WP_003226427.1 2307958..2308761(+) (spo0A) [Bacillus subtilis subsp. natto strain CGMCC 2108]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment