Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AWV81_RS08095 Genome accession   NZ_CP014471
Coordinates   1526926..1527204 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521926..1532204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS08075 (AWV81_08070) panEB 1523114..1524025 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  AWV81_RS08080 (AWV81_08075) ampS 1524059..1525291 (-) 1233 WP_003232341.1 aminopeptidase -
  AWV81_RS08085 (AWV81_08080) ykpC 1525400..1525534 (-) 135 WP_003238865.1 protein YkpC -
  AWV81_RS08090 (AWV81_08085) mreBH 1525635..1526642 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  AWV81_RS08095 (AWV81_08090) abrB 1526926..1527204 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  AWV81_RS08100 (AWV81_08095) kinC 1527394..1528677 (+) 1284 WP_014479686.1 two-component sensor histidine kinase KinC -
  AWV81_RS08105 (AWV81_08100) ykqA 1528693..1529526 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  AWV81_RS08110 (AWV81_08105) ktrC 1529589..1530254 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  AWV81_RS08115 (AWV81_08110) ade 1530409..1532142 (+) 1734 WP_014479688.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=171718 AWV81_RS08095 WP_003244728.1 1526926..1527204(+) (abrB) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=171718 AWV81_RS08095 WP_003244728.1 1526926..1527204(+) (abrB) [Bacillus subtilis subsp. natto strain CGMCC 2108]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment