Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AWV81_RS05815 Genome accession   NZ_CP014471
Coordinates   1117250..1117828 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112250..1122828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS05795 (AWV81_05790) hemAT 1112770..1114068 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  AWV81_RS05800 (AWV81_05795) comW 1114207..1115735 (-) 1529 Protein_1076 FAD-dependent oxidoreductase -
  AWV81_RS05805 (AWV81_05800) yhxC 1115839..1116696 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  AWV81_RS05810 (AWV81_05805) yhzC 1116724..1116957 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  AWV81_RS05815 (AWV81_05810) comK 1117250..1117828 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AWV81_RS05820 (AWV81_05815) yhxD 1117873..1118772 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  AWV81_RS05825 (AWV81_05820) yhjA 1118989..1119258 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  AWV81_RS05830 (AWV81_05825) yhjB 1119302..1120771 (-) 1470 WP_014479374.1 sodium:solute symporter -
  AWV81_RS05835 (AWV81_05830) yhjC 1120768..1120968 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AWV81_RS05840 (AWV81_05835) - 1121167..1121538 (-) 372 WP_014476361.1 hypothetical protein -
  AWV81_RS05845 (AWV81_05840) yhjE 1121690..1122313 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  AWV81_RS05850 (AWV81_05845) lepB 1122315..1122821 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=171704 AWV81_RS05815 WP_003245329.1 1117250..1117828(+) (comK) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=171704 AWV81_RS05815 WP_003245329.1 1117250..1117828(+) (comK) [Bacillus subtilis subsp. natto strain CGMCC 2108]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment