Detailed information    

insolico Bioinformatically predicted

Overview


Name   Cj0683   Type   Machinery gene
Locus tag   BLD38_RS02735 Genome accession   NZ_CP017862
Coordinates   480618..481055 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   Q0PAJ6
Organism   Campylobacter jejuni strain FJ3124     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 475618..486055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD38_RS02710 (BLD38_02710) - 476390..476590 (-) 201 WP_002790505.1 hypothetical protein -
  BLD38_RS02715 (BLD38_02715) - 476871..477560 (+) 690 WP_071319657.1 XRE family transcriptional regulator -
  BLD38_RS09425 - 477779..477919 (+) 141 WP_251815777.1 hypothetical protein -
  BLD38_RS09520 - 477906..478037 (+) 132 WP_256379349.1 hypothetical protein -
  BLD38_RS02720 (BLD38_02720) uvrB 478032..480005 (-) 1974 WP_002884660.1 excinuclease ABC subunit UvrB Machinery gene
  BLD38_RS02725 (BLD38_02725) - 480159..480389 (+) 231 WP_002852327.1 hypothetical protein -
  BLD38_RS02730 (BLD38_02730) - 480379..480621 (+) 243 WP_002854947.1 hypothetical protein -
  BLD38_RS02735 (BLD38_02735) Cj0683 480618..481055 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BLD38_RS02740 (BLD38_02740) priA 481037..482890 (+) 1854 WP_002884657.1 primosomal protein N' -
  BLD38_RS02745 (BLD38_02745) cipA 482900..484295 (-) 1396 Protein_528 DUF2972 domain-containing protein -
  BLD38_RS02750 (BLD38_02750) ispG 484441..485514 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence


Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=171691 BLD38_RS02735 WP_002852324.1 480618..481055(+) (Cj0683) [Campylobacter jejuni strain FJ3124]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=171691 BLD38_RS02735 WP_002852324.1 480618..481055(+) (Cj0683) [Campylobacter jejuni strain FJ3124]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q0PAJ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1


Multiple sequence alignment