Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BLD41_RS03510 Genome accession   NZ_CP017859
Coordinates   589713..590096 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain YQ2210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584713..595096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD41_RS03490 (BLD41_03490) - 584792..586726 (-) 1935 WP_071450849.1 ribonuclease R family protein -
  BLD41_RS03495 (BLD41_03495) ilvC 586845..587867 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  BLD41_RS03500 (BLD41_03500) - 587871..588953 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  BLD41_RS03505 (BLD41_03505) dprA 588943..589716 (+) 774 WP_070317309.1 DNA-processing protein DprA Machinery gene
  BLD41_RS03510 (BLD41_03510) dprB 589713..590096 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  BLD41_RS03515 (BLD41_03515) - 590125..590964 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BLD41_RS03520 (BLD41_03520) msrA 591140..591685 (-) 546 WP_079865832.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BLD41_RS03525 (BLD41_03525) ppa 591678..592196 (-) 519 WP_002852138.1 inorganic diphosphatase -
  BLD41_RS03530 (BLD41_03530) adk 592206..592784 (-) 579 WP_032590860.1 adenylate kinase -
  BLD41_RS03535 (BLD41_03535) aspS 592781..594532 (-) 1752 WP_052777314.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=171597 BLD41_RS03510 WP_002852281.1 589713..590096(+) (dprB) [Campylobacter jejuni strain YQ2210]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=171597 BLD41_RS03510 WP_002852281.1 589713..590096(+) (dprB) [Campylobacter jejuni strain YQ2210]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449