Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BLJ80_RS16925 Genome accession   NZ_CP017844
Coordinates   3149618..3150094 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain FMU073332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3144618..3155094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLJ80_RS16875 (BLJ80_15460) sbmC 3145111..3145584 (+) 474 WP_001394439.1 DNA gyrase inhibitor SbmC -
  BLJ80_RS16880 (BLJ80_15465) yeeA 3145782..3146840 (+) 1059 WP_001200905.1 FUSC family protein -
  BLJ80_RS16885 (BLJ80_15470) tmaR 3147012..3147341 (+) 330 WP_001374017.1 DUF496 family protein -
  BLJ80_RS16890 (BLJ80_15475) - 3147442..3147624 (-) 183 WP_024169664.1 EutP/PduV family microcompartment system protein -
  BLJ80_RS28505 - 3147678..3147824 (+) 147 Protein_2980 transposase domain-containing protein -
  BLJ80_RS29335 (BLJ80_15480) - 3148113..3148193 (-) 81 Protein_2981 hypothetical protein -
  BLJ80_RS16900 (BLJ80_15485) yeeW 3148239..3148433 (-) 195 WP_000988599.1 DUF5983 family protein -
  BLJ80_RS28510 (BLJ80_15490) - 3148495..3148803 (-) 309 Protein_2983 TA system toxin CbtA family protein -
  BLJ80_RS16915 (BLJ80_15495) cbeA 3148892..3149260 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BLJ80_RS16920 (BLJ80_15500) yeeT 3149334..3149555 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  BLJ80_RS16925 (BLJ80_15505) radC 3149618..3150094 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  BLJ80_RS16930 (BLJ80_15510) - 3150110..3150589 (-) 480 WP_000860076.1 antirestriction protein -
  BLJ80_RS16935 (BLJ80_15515) - 3150671..3151492 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  BLJ80_RS30250 - 3151713..3151790 (-) 78 Protein_2989 hypothetical protein -
  BLJ80_RS30255 - 3151782..3151970 (+) 189 Protein_2990 IS4 family transposase -
  BLJ80_RS30260 (BLJ80_15520) - 3151967..3152140 (+) 174 Protein_2991 cobalamin biosynthesis protein -
  BLJ80_RS16960 (BLJ80_15525) cobU 3152274..3152820 (+) 547 Protein_2992 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  BLJ80_RS16965 (BLJ80_15530) cobS 3152817..3153560 (+) 744 WP_032328575.1 adenosylcobinamide-GDP ribazoletransferase -
  BLJ80_RS16970 (BLJ80_15535) cobT 3153572..3154651 (+) 1080 WP_001193822.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=171522 BLJ80_RS16925 WP_001186773.1 3149618..3150094(-) (radC) [Escherichia coli strain FMU073332]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=171522 BLJ80_RS16925 WP_001186773.1 3149618..3150094(-) (radC) [Escherichia coli strain FMU073332]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392