Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BKP58_RS20085 Genome accession   NZ_CP017763
Coordinates   3767918..3768664 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3762918..3773664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS20070 (BKP58_20020) - 3763145..3763336 (-) 192 WP_003222590.1 hypothetical protein -
  BKP58_RS20075 (BKP58_20025) valS 3763784..3766426 (+) 2643 WP_014480461.1 valine--tRNA ligase -
  BKP58_RS20080 (BKP58_20030) folC 3766486..3767778 (+) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BKP58_RS20085 (BKP58_20035) comC 3767918..3768664 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  BKP58_RS20090 (BKP58_20040) spoIIB 3768798..3769796 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  BKP58_RS20095 (BKP58_20045) maf 3769949..3770518 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  BKP58_RS20100 (BKP58_20050) ysxA/radC 3770555..3771250 (+) 696 WP_014480455.1 RadC family protein Machinery gene
  BKP58_RS20105 (BKP58_20055) mreB 3771342..3772355 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BKP58_RS20110 (BKP58_20060) mreC 3772386..3773258 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=171369 BKP58_RS20085 WP_072592551.1 3767918..3768664(+) (comC) [Bacillus subtilis strain 29R7-12]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=171369 BKP58_RS20085 WP_072592551.1 3767918..3768664(+) (comC) [Bacillus subtilis strain 29R7-12]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996