Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BKP58_RS14760 Genome accession   NZ_CP017763
Coordinates   2746668..2747801 (+) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2741668..2752801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS14725 (BKP58_14720) ywmC 2742477..2743160 (+) 684 WP_014481181.1 vWA domain-containing protein -
  BKP58_RS22740 - 2743291..2743431 (+) 141 WP_014481180.1 hypothetical protein -
  BKP58_RS14735 (BKP58_14730) ywmD 2743484..2744158 (+) 675 WP_014481179.1 vWA domain-containing protein -
  BKP58_RS14740 (BKP58_14735) - 2744253..2744414 (+) 162 WP_003227706.1 hypothetical protein -
  BKP58_RS14745 (BKP58_14740) fdhD 2744647..2745435 (+) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BKP58_RS14750 (BKP58_14745) moaA 2745451..2746476 (+) 1026 WP_014481177.1 GTP 3',8-cyclase MoaA -
  BKP58_RS14760 (BKP58_14750) rapC 2746668..2747801 (+) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  BKP58_RS14765 (BKP58_14755) - 2747957..2748436 (+) 480 WP_026113664.1 hypothetical protein -
  BKP58_RS14770 (BKP58_14760) csbD 2748509..2748697 (+) 189 WP_014481173.1 stress response protein CsbD -
  BKP58_RS23580 - 2748910..2749122 (+) 213 Protein_2849 urea ABC transporter substrate-binding protein -
  BKP58_RS22985 - 2749389..2749547 (+) 159 WP_158332665.1 hypothetical protein -
  BKP58_RS14785 (BKP58_14770) ureA 2749741..2750058 (+) 318 WP_014478236.1 urease subunit gamma -
  BKP58_RS14790 (BKP58_14775) ureB 2750055..2750429 (+) 375 WP_014481169.1 urease subunit beta -
  BKP58_RS14795 (BKP58_14780) ureC 2750426..2752135 (+) 1710 WP_014481168.1 urease subunit alpha -
  BKP58_RS14800 (BKP58_14785) ywnA 2752270..2752671 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=171341 BKP58_RS14760 WP_014481175.1 2746668..2747801(+) (rapC) [Bacillus subtilis strain 29R7-12]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=171341 BKP58_RS14760 WP_014481175.1 2746668..2747801(+) (rapC) [Bacillus subtilis strain 29R7-12]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422