Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BKP58_RS12025 Genome accession   NZ_CP017763
Coordinates   2224935..2225165 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain 29R7-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219935..2230165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS12015 (BKP58_11995) spoVT 2220660..2221196 (-) 537 WP_003218365.1 stage V sporulation protein T -
  BKP58_RS12020 (BKP58_12000) mfd 2221332..2224865 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  BKP58_RS12025 (BKP58_12005) subA/fin 2224935..2225165 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BKP58_RS12030 (BKP58_12010) pth 2225225..2225791 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  BKP58_RS12035 (BKP58_12015) rplYB 2225898..2226512 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BKP58_RS12040 (BKP58_12020) prsS 2226597..2227550 (-) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  BKP58_RS12045 (BKP58_12025) glmU 2227573..2228943 (-) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BKP58_RS12050 (BKP58_12035) spoVG 2229136..2229429 (-) 294 WP_003218346.1 septation regulator SpoVG -
  BKP58_RS12055 (BKP58_12040) ridA 2229624..2230001 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=171323 BKP58_RS12025 WP_003243417.1 2224935..2225165(-) (subA/fin) [Bacillus subtilis strain 29R7-12]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=171323 BKP58_RS12025 WP_003243417.1 2224935..2225165(-) (subA/fin) [Bacillus subtilis strain 29R7-12]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1