Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BKP58_RS09210 Genome accession   NZ_CP017763
Coordinates   1698419..1699060 (-) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1693419..1704060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS09195 (BKP58_09215) ydfK 1693924..1694613 (+) 690 WP_019712443.1 DUF554 domain-containing protein -
  BKP58_RS09200 (BKP58_09220) cesA 1694816..1695718 (+) 903 WP_014478976.1 carboxylesterase -
  BKP58_RS09205 (BKP58_09225) pleJ 1696129..1698303 (-) 2175 WP_033881069.1 MMPL family transporter -
  BKP58_RS09210 (BKP58_09230) vraR 1698419..1699060 (-) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  BKP58_RS09215 (BKP58_09235) ydfH 1699053..1700276 (-) 1224 WP_033881070.1 two-component system sensor histidine kinase YdfH -
  BKP58_RS09220 (BKP58_09240) - 1700544..1700687 (+) 144 WP_014478971.1 hypothetical protein -
  BKP58_RS09225 - 1700684..1700863 (+) 180 WP_010886421.1 hypothetical protein -
  BKP58_RS09230 (BKP58_09245) ydfG 1700949..1701392 (+) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  BKP58_RS09235 (BKP58_09250) ydfF 1701473..1702153 (-) 681 WP_014478969.1 ArsR/SmtB family transcription factor -
  BKP58_RS09240 (BKP58_09255) ydfE 1702243..1702866 (+) 624 WP_014478968.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=171306 BKP58_RS09210 WP_014478974.1 1698419..1699060(-) (vraR) [Bacillus subtilis strain 29R7-12]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=171306 BKP58_RS09210 WP_014478974.1 1698419..1699060(-) (vraR) [Bacillus subtilis strain 29R7-12]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371