Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   BKP58_RS03925 Genome accession   NZ_CP017763
Coordinates   700975..702000 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain 29R7-12     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 695975..707000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS03890 (BKP58_03910) panEA 696460..697356 (-) 897 WP_014479721.1 2-dehydropantoate 2-reductase -
  BKP58_RS03895 (BKP58_03915) ylbP 697516..697998 (+) 483 WP_014476736.1 N-acetyltransferase -
  BKP58_RS03900 (BKP58_03920) gerR 698055..698636 (-) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  BKP58_RS03905 (BKP58_03925) rpmF 698782..698961 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  BKP58_RS03910 (BKP58_03930) ylbN 698983..699501 (-) 519 WP_014479718.1 YceD family protein -
  BKP58_RS03915 (BKP58_03935) - 699529..699714 (+) 186 WP_003232215.1 hypothetical protein -
  BKP58_RS03920 (BKP58_03940) tmcAL 699711..700958 (+) 1248 WP_014479717.1 nucleotidyltransferase -
  BKP58_RS03925 (BKP58_03945) sepM 700975..702000 (-) 1026 WP_003245451.1 protease DdcP Regulator
  BKP58_RS03930 (BKP58_03950) ylbK 702002..702784 (-) 783 WP_003232221.1 patatin family protein -
  BKP58_RS03935 (BKP58_03955) spoVV 702965..704191 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  BKP58_RS03940 (BKP58_03960) coaD 704202..704687 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BKP58_RS03945 (BKP58_03965) rsmD 704692..705246 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BKP58_RS03950 (BKP58_03970) ylbG 705569..705841 (-) 273 WP_009967171.1 YlbG family protein -
  BKP58_RS03955 (BKP58_03975) ylbF 705896..706345 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BKP58_RS03960 (BKP58_03980) ylbE 706461..706700 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=171267 BKP58_RS03925 WP_003245451.1 700975..702000(-) (sepM) [Bacillus subtilis strain 29R7-12]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=171267 BKP58_RS03925 WP_003245451.1 700975..702000(-) (sepM) [Bacillus subtilis strain 29R7-12]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402