Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB478_RS09855 Genome accession   NZ_CP017679
Coordinates   1939880..1940698 (-) Length   272 a.a.
NCBI ID   WP_001124417.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007883     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1934880..1945698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS09830 (AB478_09595) - 1935973..1936950 (+) 978 WP_000379098.1 metal-dependent hydrolase -
  AB478_RS09840 (AB478_09605) - 1937211..1938047 (-) 837 WP_000886452.1 hypothetical protein -
  AB478_RS09845 (AB478_09610) - 1938056..1939573 (-) 1518 WP_000535839.1 ABC transporter ATP-binding protein -
  AB478_RS09850 (AB478_09615) - 1939588..1939902 (-) 315 WP_000435806.1 YfhH family protein -
  AB478_RS09855 (AB478_09620) recX 1939880..1940698 (-) 819 WP_001124417.1 recombination regulator RecX Regulator
  AB478_RS09860 (AB478_09625) sgtB 1940959..1941768 (-) 810 WP_000830379.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  AB478_RS09865 (AB478_09630) - 1942108..1942623 (-) 516 WP_000163284.1 type 1 glutamine amidotransferase domain-containing protein -
  AB478_RS09870 (AB478_09635) - 1942753..1942914 (-) 162 WP_001005407.1 SE1561 family protein -
  AB478_RS09875 (AB478_09640) yfkAB 1943138..1944289 (+) 1152 WP_001089601.1 radical SAM/CxCxxxxC motif protein YfkAB -
  AB478_RS09880 (AB478_09645) - 1944549..1945079 (-) 531 WP_000184381.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32244.13 Da        Isoelectric Point: 5.9211

>NTDB_id=170872 AB478_RS09855 WP_001124417.1 1939880..1940698(-) (recX) [Staphylococcus aureus strain CFSAN007883]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
ILYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=170872 AB478_RS09855 WP_001124417.1 1939880..1940698(-) (recX) [Staphylococcus aureus strain CFSAN007883]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGATATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAATAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATACTATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAAGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGGCCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.265

100

0.993