Detailed information
Bioinformatically predicted
Overview
| Name | lrpC | Type | Machinery gene |
| Locus tag | AB478_RS00165 | Genome accession | NZ_CP017679 |
| Coordinates | 38675..39088 (+) | Length | 137 a.a. |
| NCBI ID | WP_000998780.1 | Uniprot ID | C1PH97 |
| Organism | Staphylococcus aureus strain CFSAN007883 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 33675..44088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB478_RS00145 (AB478_00135) | - | 33676..34962 (+) | 1287 | WP_000513494.1 | SIR2 family protein | - |
| AB478_RS00150 (AB478_00140) | - | 34968..36656 (+) | 1689 | WP_000555614.1 | ATP-binding protein | - |
| AB478_RS14060 | - | 36817..36954 (+) | 138 | WP_021758025.1 | hypothetical protein | - |
| AB478_RS00155 (AB478_00145) | - | 37217..37828 (+) | 612 | WP_000856594.1 | hypothetical protein | - |
| AB478_RS00160 (AB478_00150) | - | 38167..38574 (-) | 408 | WP_000173401.1 | hypothetical protein | - |
| AB478_RS00165 (AB478_00155) | lrpC | 38675..39088 (+) | 414 | WP_000998780.1 | Lrp/AsnC family transcriptional regulator | Machinery gene |
| AB478_RS00175 (AB478_00160) | - | 39150..39623 (+) | 474 | WP_000455975.1 | GNAT family N-acetyltransferase | - |
| AB478_RS00180 (AB478_00165) | - | 39731..40717 (-) | 987 | WP_000662031.1 | tRNA dihydrouridine synthase | - |
| AB478_RS00185 (AB478_00170) | - | 41025..41228 (+) | 204 | WP_000389759.1 | DUF6007 family protein | - |
| AB478_RS00190 (AB478_00175) | - | 41277..41573 (+) | 297 | WP_000179901.1 | TfoX/Sxy family protein | - |
| AB478_RS00195 (AB478_00180) | - | 41635..42855 (-) | 1221 | WP_000130756.1 | MFS transporter | - |
| AB478_RS00200 (AB478_00185) | - | 42848..43399 (-) | 552 | WP_000627025.1 | flavodoxin family protein | - |
| AB478_RS00205 (AB478_00190) | - | 43512..44024 (+) | 513 | Protein_36 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15971.29 Da Isoelectric Point: 4.6692
>NTDB_id=170801 AB478_RS00165 WP_000998780.1 38675..39088(+) (lrpC) [Staphylococcus aureus strain CFSAN007883]
MNDLINEKIINVLLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV
MNDLINEKIINVLLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV
Nucleotide
Download Length: 414 bp
>NTDB_id=170801 AB478_RS00165 WP_000998780.1 38675..39088(+) (lrpC) [Staphylococcus aureus strain CFSAN007883]
ATGAATGACTTAATAAATGAAAAAATAATCAATGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGATACCATACAACCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTCTAA
ATGAATGACTTAATAAATGAAAAAATAATCAATGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGATACCATACAACCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lrpC | Bacillus subtilis subsp. subtilis str. 168 |
43.284 |
97.81 |
0.423 |