Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BKN48_RS19165 Genome accession   NZ_CP017676
Coordinates   3653739..3654170 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain VV2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3648739..3659170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS19145 (BKN48_19145) spoVS 3649301..3649561 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BKN48_RS19150 (BKN48_19150) tdh 3649826..3650869 (+) 1044 WP_070548987.1 L-threonine 3-dehydrogenase -
  BKN48_RS19155 (BKN48_19155) kbl 3650882..3652060 (+) 1179 WP_038828267.1 glycine C-acetyltransferase -
  BKN48_RS19160 (BKN48_19160) miaB 3652208..3653737 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BKN48_RS19165 (BKN48_19165) ymcA 3653739..3654170 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  BKN48_RS19170 (BKN48_19170) cotE 3654432..3654977 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  BKN48_RS19175 (BKN48_19175) hexA 3655110..3657686 (+) 2577 WP_070548989.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=170702 BKN48_RS19165 WP_003231834.1 3653739..3654170(+) (ymcA) [Bacillus subtilis strain VV2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=170702 BKN48_RS19165 WP_003231834.1 3653739..3654170(+) (ymcA) [Bacillus subtilis strain VV2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment