Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AYM13_RS09755 Genome accession   NZ_CP014362
Coordinates   1908107..1908535 (-) Length   142 a.a.
NCBI ID   WP_031764158.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA300-SUR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1873494..1917089 1908107..1908535 within 0


Gene organization within MGE regions


Location: 1873494..1917089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM13_RS09515 (AYM13_09295) - 1873494..1874939 (-) 1446 WP_050961201.1 SH3 domain-containing protein -
  AYM13_RS09520 (AYM13_09300) - 1874920..1875357 (-) 438 WP_000354119.1 phage holin -
  AYM13_RS09525 (AYM13_09305) - 1875413..1875808 (-) 396 WP_031890882.1 hypothetical protein -
  AYM13_RS09530 (AYM13_09310) - 1875814..1877052 (-) 1239 WP_031890881.1 BppU family phage baseplate upper protein -
  AYM13_RS09535 (AYM13_09315) - 1877065..1878963 (-) 1899 WP_050961200.1 glucosaminidase domain-containing protein -
  AYM13_RS09540 (AYM13_09320) - 1879100..1879400 (-) 301 Protein_1801 DUF2951 domain-containing protein -
  AYM13_RS09545 (AYM13_09325) - 1879440..1879613 (-) 174 WP_000782200.1 XkdX family protein -
  AYM13_RS09550 (AYM13_09330) - 1879617..1879994 (-) 378 WP_031844790.1 DUF2977 domain-containing protein -
  AYM13_RS09555 (AYM13_09335) - 1879994..1881817 (-) 1824 WP_050961199.1 phage baseplate upper protein -
  AYM13_RS09560 (AYM13_09340) - 1881817..1883727 (-) 1911 WP_050961198.1 hypothetical protein -
  AYM13_RS09565 (AYM13_09345) - 1883742..1885643 (-) 1902 WP_000156414.1 SGNH/GDSL hydrolase family protein -
  AYM13_RS09570 (AYM13_09350) - 1885652..1886599 (-) 948 WP_031898192.1 phage tail family protein -
  AYM13_RS09575 (AYM13_09355) - 1886612..1890079 (-) 3468 WP_050961197.1 hypothetical protein -
  AYM13_RS09580 (AYM13_09360) - 1890096..1890440 (-) 345 WP_001599101.1 hypothetical protein -
  AYM13_RS09585 (AYM13_09365) - 1890470..1890835 (-) 366 WP_031898197.1 tail assembly chaperone -
  AYM13_RS09590 (AYM13_09370) - 1890897..1891478 (-) 582 WP_031898198.1 phage major tail protein, TP901-1 family -
  AYM13_RS09595 (AYM13_09375) - 1891497..1891880 (-) 384 WP_000188640.1 hypothetical protein -
  AYM13_RS09600 (AYM13_09380) - 1891892..1892239 (-) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  AYM13_RS09605 (AYM13_09385) - 1892239..1892541 (-) 303 WP_031880723.1 hypothetical protein -
  AYM13_RS09610 (AYM13_09390) - 1892538..1892870 (-) 333 WP_000208959.1 phage head-tail connector protein -
  AYM13_RS09615 (AYM13_09395) - 1892879..1893166 (-) 288 WP_001114085.1 hypothetical protein -
  AYM13_RS09620 (AYM13_09400) - 1893188..1894162 (-) 975 WP_000438500.1 phage major capsid protein -
  AYM13_RS09625 (AYM13_09405) - 1894176..1894796 (-) 621 WP_031925652.1 DUF4355 domain-containing protein -
  AYM13_RS15810 - 1894784..1894901 (-) 118 Protein_1819 hypothetical protein -
  AYM13_RS15700 (AYM13_09410) - 1894905..1895054 (-) 150 WP_031898218.1 hypothetical protein -
  AYM13_RS09630 (AYM13_09415) - 1895127..1896122 (-) 996 WP_001813737.1 minor capsid protein -
  AYM13_RS09635 (AYM13_09420) - 1896129..1897664 (-) 1536 WP_000921887.1 phage portal protein -
  AYM13_RS09640 (AYM13_09425) - 1897675..1898952 (-) 1278 WP_000169945.1 PBSX family phage terminase large subunit -
  AYM13_RS09645 (AYM13_09430) - 1898939..1899379 (-) 441 WP_001003271.1 terminase small subunit -
  AYM13_RS09650 (AYM13_09435) - 1899566..1899985 (-) 420 WP_000058632.1 transcriptional regulator -
  AYM13_RS09655 (AYM13_09440) - 1900000..1900146 (-) 147 WP_000990005.1 hypothetical protein -
  AYM13_RS09660 (AYM13_09445) - 1900147..1900320 (-) 174 WP_031924097.1 transcriptional activator RinB -
  AYM13_RS09665 (AYM13_09450) - 1900317..1900523 (-) 207 WP_031764620.1 DUF1381 domain-containing protein -
  AYM13_RS09670 (AYM13_09455) - 1900560..1901066 (-) 507 WP_076035554.1 dUTPase -
  AYM13_RS15705 - 1901081..1901242 (-) 162 WP_000889682.1 hypothetical protein -
  AYM13_RS09675 (AYM13_09460) - 1901243..1901524 (-) 282 WP_000454994.1 hypothetical protein -
  AYM13_RS15710 - 1901525..1901698 (-) 174 WP_000028424.1 hypothetical protein -
  AYM13_RS09680 (AYM13_09465) - 1901688..1901939 (-) 252 WP_076035555.1 DUF1024 family protein -
  AYM13_RS09685 (AYM13_09470) - 1901932..1902321 (-) 390 WP_033861700.1 hypothetical protein -
  AYM13_RS09690 (AYM13_09475) - 1902318..1902665 (-) 348 WP_000979209.1 YopX family protein -
  AYM13_RS09695 (AYM13_09480) - 1902665..1902856 (-) 192 WP_076035556.1 hypothetical protein -
  AYM13_RS09700 (AYM13_09485) - 1902853..1903233 (-) 381 WP_076035557.1 hypothetical protein -
  AYM13_RS09705 (AYM13_09490) - 1903247..1903495 (-) 249 WP_076035558.1 phi PVL orf 51-like protein -
  AYM13_RS09710 (AYM13_09495) - 1903496..1904005 (-) 510 WP_076035559.1 SA1788 family PVL leukocidin-associated protein -
  AYM13_RS09715 (AYM13_09500) - 1904006..1904191 (-) 186 WP_072512743.1 DUF3113 family protein -
  AYM13_RS09720 (AYM13_09505) - 1904196..1904600 (-) 405 WP_076035560.1 DUF1064 domain-containing protein -
  AYM13_RS09725 (AYM13_09510) - 1904611..1904832 (-) 222 WP_001123685.1 DUF3269 family protein -
  AYM13_RS09730 (AYM13_09515) - 1904835..1905050 (-) 216 WP_001024406.1 hypothetical protein -
  AYM13_RS09735 (AYM13_09520) - 1905047..1906288 (-) 1242 WP_001106169.1 DnaB helicase C-terminal domain-containing protein -
  AYM13_RS09740 (AYM13_09525) - 1906285..1906641 (-) 357 WP_031764163.1 hypothetical protein -
  AYM13_RS09745 (AYM13_09530) - 1906641..1907426 (-) 786 WP_076035561.1 phage replisome organizer N-terminal domain-containing protein -
  AYM13_RS09750 (AYM13_09535) - 1907398..1908093 (-) 696 WP_031764159.1 putative HNHc nuclease -
  AYM13_RS09755 (AYM13_09540) ssbA 1908107..1908535 (-) 429 WP_031764158.1 single-stranded DNA-binding protein Machinery gene
  AYM13_RS09760 (AYM13_09545) - 1908535..1909173 (-) 639 WP_001043062.1 ERF family protein -
  AYM13_RS09765 (AYM13_09550) - 1909173..1909652 (-) 480 WP_000002512.1 siphovirus Gp157 family protein -
  AYM13_RS09770 (AYM13_09555) - 1909645..1909881 (-) 237 WP_000848127.1 hypothetical protein -
  AYM13_RS09775 (AYM13_09560) - 1909889..1910149 (-) 261 WP_000291100.1 DUF1108 family protein -
  AYM13_RS09780 (AYM13_09565) - 1910243..1910404 (-) 162 WP_000048124.1 DUF1270 family protein -
  AYM13_RS09785 (AYM13_09570) - 1910397..1910618 (-) 222 WP_000977381.1 hypothetical protein -
  AYM13_RS09790 (AYM13_09575) - 1910689..1911354 (+) 666 WP_031764600.1 hypothetical protein -
  AYM13_RS15815 - 1911375..1911443 (-) 69 Protein_1856 hypothetical protein -
  AYM13_RS09795 (AYM13_09580) - 1911459..1912208 (-) 750 WP_001148587.1 phage antirepressor KilAC domain-containing protein -
  AYM13_RS09800 (AYM13_09585) - 1912210..1912395 (-) 186 WP_000933365.1 helix-turn-helix transcriptional regulator -
  AYM13_RS15870 - 1912838..1912972 (+) 135 WP_001119050.1 hypothetical protein -
  AYM13_RS09805 (AYM13_09590) - 1912969..1913172 (-) 204 WP_031764597.1 hypothetical protein -
  AYM13_RS09810 (AYM13_09595) - 1913186..1913422 (-) 237 WP_001121116.1 helix-turn-helix transcriptional regulator -
  AYM13_RS09815 (AYM13_09600) - 1913574..1913888 (+) 315 WP_000333630.1 helix-turn-helix transcriptional regulator -
  AYM13_RS09820 (AYM13_09605) - 1913901..1914362 (+) 462 WP_031764593.1 toxin -
  AYM13_RS09825 (AYM13_09610) - 1914380..1914883 (+) 504 WP_031764591.1 hypothetical protein -
  AYM13_RS09830 (AYM13_09615) - 1914945..1915994 (+) 1050 WP_031764589.1 tyrosine-type recombinase/integrase -
  AYM13_RS09835 (AYM13_09620) - 1916070..1917089 (-) 1020 Protein_1866 SasC/FmtB family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15958.67 Da        Isoelectric Point: 7.0144

>NTDB_id=170702 AYM13_RS09755 WP_031764158.1 1908107..1908535(-) (ssbA) [Staphylococcus aureus strain USA300-SUR1]
MLNRVVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTDNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=170702 AYM13_RS09755 WP_031764158.1 1908107..1908535(-) (ssbA) [Staphylococcus aureus strain USA300-SUR1]
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAACGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCAGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGATAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

74.648

0.444
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.099

0.373
  ssbB/cilA Streptococcus mitis SK321

44.915

83.099

0.373

Multiple sequence alignment