Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | AYM13_RS08390 | Genome accession | NZ_CP014362 |
| Coordinates | 1643334..1643633 (-) | Length | 99 a.a. |
| NCBI ID | WP_000844413.1 | Uniprot ID | X5E258 |
| Organism | Staphylococcus aureus strain USA300-SUR1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1638334..1648633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYM13_RS08365 (AYM13_08155) | gcvPA | 1639546..1640892 (-) | 1347 | WP_000019687.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| AYM13_RS08370 (AYM13_08160) | gcvT | 1640912..1642003 (-) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AYM13_RS08375 (AYM13_08165) | - | 1642162..1642686 (-) | 525 | WP_001015117.1 | shikimate kinase | - |
| AYM13_RS08380 (AYM13_08170) | - | 1642676..1642822 (-) | 147 | WP_001789879.1 | hypothetical protein | - |
| AYM13_RS08385 (AYM13_08175) | comGF | 1642919..1643416 (-) | 498 | WP_001789864.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AYM13_RS08390 (AYM13_08180) | comGE | 1643334..1643633 (-) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| AYM13_RS08395 (AYM13_08185) | comGD | 1643620..1644066 (-) | 447 | WP_001791635.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AYM13_RS08400 (AYM13_08190) | comGC | 1644044..1644355 (-) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AYM13_RS08405 (AYM13_08195) | comGB | 1644369..1645439 (-) | 1071 | WP_000775708.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AYM13_RS08410 (AYM13_08200) | comGA | 1645411..1646385 (-) | 975 | WP_000697228.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AYM13_RS08415 (AYM13_08205) | - | 1646437..1647060 (-) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| AYM13_RS08420 (AYM13_08210) | - | 1647057..1647386 (-) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| AYM13_RS08425 (AYM13_08215) | - | 1647386..1648372 (-) | 987 | WP_000161314.1 | ROK family glucokinase | - |
| AYM13_RS08430 (AYM13_08220) | - | 1648369..1648572 (-) | 204 | WP_000087561.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 11093.20 Da Isoelectric Point: 9.9215
>NTDB_id=170688 AYM13_RS08390 WP_000844413.1 1643334..1643633(-) (comGE) [Staphylococcus aureus strain USA300-SUR1]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY
Nucleotide
Download Length: 300 bp
>NTDB_id=170688 AYM13_RS08390 WP_000844413.1 1643334..1643633(-) (comGE) [Staphylococcus aureus strain USA300-SUR1]
ATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA
ATGAAAAGCTATAAGTGTAAAGGTTCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Staphylococcus aureus MW2 |
86.842 |
100 |
1 |
| comGE | Staphylococcus aureus N315 |
98.99 |
100 |
0.99 |