Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   BKN48_RS15405 Genome accession   NZ_CP017676
Coordinates   2945310..2948201 (+) Length   963 a.a.
NCBI ID   WP_080481305.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2940310..2953201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS15380 (BKN48_15380) yhzD 2940750..2940935 (-) 186 WP_003233264.1 YhzD family protein -
  BKN48_RS15385 (BKN48_15385) yhaQ 2941062..2941958 (+) 897 WP_032725309.1 ABC transporter ATP-binding protein -
  BKN48_RS15390 (BKN48_15390) yhaP 2941951..2943210 (+) 1260 WP_003244912.1 ABC transporter permease -
  BKN48_RS21585 - 2943364..2943816 (-) 453 WP_021479643.1 hypothetical protein -
  BKN48_RS15400 (BKN48_15400) yhaO 2944079..2945305 (+) 1227 WP_070548759.1 metallophosphoesterase family protein -
  BKN48_RS15405 (BKN48_15405) sbcE 2945310..2948201 (+) 2892 WP_080481305.1 DNA repair/recombination ATPase SbcE Machinery gene
  BKN48_RS15410 (BKN48_15410) yhaM 2948275..2949219 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  BKN48_RS15415 (BKN48_15415) yhaL 2949344..2949556 (+) 213 WP_070548761.1 sporulation protein YhaL -
  BKN48_RS15420 (BKN48_15420) prsA 2949596..2950480 (-) 885 WP_070548762.1 peptidylprolyl isomerase -
  BKN48_RS20870 yhzE1 2950640..2950726 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  BKN48_RS15425 (BKN48_15425) yhzE2 2950851..2950937 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  BKN48_RS20875 - 2950990..2951172 (-) 183 WP_024571667.1 hypothetical protein -
  BKN48_RS15430 (BKN48_15430) yhaJ 2951280..2951798 (-) 519 WP_070548763.1 DUF3267 domain-containing protein -
  BKN48_RS15435 (BKN48_15435) yhaI 2952006..2952347 (+) 342 WP_009966921.1 YhaI family protein -
  BKN48_RS15440 (BKN48_15440) scoC 2952344..2952955 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111205.17 Da        Isoelectric Point: 6.1617

>NTDB_id=170662 BKN48_RS15405 WP_080481305.1 2945310..2948201(+) (sbcE) [Bacillus subtilis strain VV2]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRDASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKPSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDSFFAIADISRQLKD
TENKLHHVNAQLQGGYPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=170662 BKN48_RS15405 WP_080481305.1 2945310..2948201(+) (sbcE) [Bacillus subtilis strain VV2]
GTGACAGCTTTGCGAATTATATCCTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGTGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCATCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGACGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAACCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACTA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATTCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGTACCCGGAGGAACTTGAACTGGCGGATTCAAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATTGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTAGAAACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CTGAAGGCGGTAGGCAGATTTTGTATTTTACATGTCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

99.273

100

0.993