Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BKN48_RS12455 Genome accession   NZ_CP017676
Coordinates   2380668..2381102 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain VV2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2375668..2386102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS12425 (BKN48_12425) ydaD 2376315..2377175 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  BKN48_RS12430 (BKN48_12430) lyxE 2377191..2377694 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  BKN48_RS12435 (BKN48_12435) ydaF 2377782..2378333 (+) 552 WP_003234398.1 GNAT family N-acetyltransferase -
  BKN48_RS12440 (BKN48_12440) ydaG 2378411..2378833 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  BKN48_RS12445 (BKN48_12445) amj 2379339..2380148 (+) 810 WP_003234394.1 lipid II flippase Amj -
  BKN48_RS12450 (BKN48_12450) ydzA 2380193..2380483 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  BKN48_RS12455 (BKN48_12455) lrpC 2380668..2381102 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  BKN48_RS12460 (BKN48_12460) topB 2381167..2383350 (+) 2184 WP_032726499.1 DNA topoisomerase III -
  BKN48_RS12465 (BKN48_12465) ephJ 2383553..2384641 (+) 1089 WP_021481724.1 hypothetical protein -
  BKN48_RS12470 (BKN48_12470) epsK 2384622..2385473 (+) 852 WP_021481723.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=170652 BKN48_RS12455 WP_003246585.1 2380668..2381102(+) (lrpC) [Bacillus subtilis strain VV2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=170652 BKN48_RS12455 WP_003246585.1 2380668..2381102(+) (lrpC) [Bacillus subtilis strain VV2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1