Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BKN48_RS10385 Genome accession   NZ_CP017676
Coordinates   1968100..1968330 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain VV2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1963100..1973330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS10350 (BKN48_10350) ridA 1963264..1963641 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BKN48_RS10355 (BKN48_10355) spoVG 1963836..1964129 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BKN48_RS10365 (BKN48_10365) glmU 1964322..1965692 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BKN48_RS10370 (BKN48_10370) prsS 1965715..1966668 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  BKN48_RS10375 (BKN48_10375) rplYB 1966753..1967367 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BKN48_RS10380 (BKN48_10380) pth 1967474..1968040 (+) 567 WP_070548350.1 aminoacyl-tRNA hydrolase -
  BKN48_RS10385 (BKN48_10385) subA/fin 1968100..1968330 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BKN48_RS10390 (BKN48_10390) mfd 1968400..1971933 (+) 3534 WP_070548352.1 transcription-repair coupling factor -
  BKN48_RS10395 (BKN48_10395) spoVT 1972069..1972605 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=170635 BKN48_RS10385 WP_003243417.1 1968100..1968330(+) (subA/fin) [Bacillus subtilis strain VV2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=170635 BKN48_RS10385 WP_003243417.1 1968100..1968330(+) (subA/fin) [Bacillus subtilis strain VV2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1