Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BKN48_RS09320 Genome accession   NZ_CP017676
Coordinates   1768999..1769688 (-) Length   229 a.a.
NCBI ID   WP_070548251.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763999..1774688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS09300 (BKN48_09300) yxeA 1764904..1765251 (-) 348 WP_021481023.1 YxeA family protein -
  BKN48_RS09305 (BKN48_09305) yxdM 1765265..1767133 (-) 1869 WP_070548247.1 ABC transporter permease YxdM -
  BKN48_RS09310 (BKN48_09310) yxdL 1767108..1767881 (-) 774 WP_021481025.1 ABC transporter ATP-binding protein YxdL -
  BKN48_RS09315 (BKN48_09315) yxdK 1768025..1769002 (-) 978 WP_070548249.1 two-component system sensor histidine kinase YxdK -
  BKN48_RS09320 (BKN48_09320) braR 1768999..1769688 (-) 690 WP_070548251.1 two-component system response regulator YxdJ Regulator
  BKN48_RS09325 (BKN48_09325) iolJ 1769796..1770668 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  BKN48_RS09330 (BKN48_09330) iolI 1770689..1771525 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  BKN48_RS09335 (BKN48_09335) iolH 1771611..1772480 (-) 870 WP_070548253.1 sugar phosphate isomerase/epimerase family protein -
  BKN48_RS09340 (BKN48_09340) iolG 1772500..1773534 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26599.36 Da        Isoelectric Point: 4.9553

>NTDB_id=170625 BKN48_RS09320 WP_070548251.1 1768999..1769688(-) (braR) [Bacillus subtilis strain VV2]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAANFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=170625 BKN48_RS09320 WP_070548251.1 1768999..1769688(-) (braR) [Bacillus subtilis strain VV2]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGAATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment