Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AWN69_RS21450 Genome accession   NZ_CP014348
Coordinates   4311323..4311952 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. MG1655 strain JW5437-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4306323..4316952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWN69_RS21435 (AWN69_21455) helD 4306565..4308619 (-) 2055 WP_001295354.1 DNA helicase IV -
  AWN69_RS21440 (AWN69_21460) yccF 4308742..4309188 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AWN69_RS21445 (AWN69_21465) yccS 4309198..4311360 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AWN69_RS21450 (AWN69_21470) sxy/tfoX 4311323..4311952 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AWN69_RS21455 (AWN69_21475) sulA 4312171..4312680 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AWN69_RS21465 (AWN69_21485) ompA 4313037..4314077 (+) 1041 WP_000750416.1 porin OmpA -
  AWN69_RS21470 (AWN69_21490) matP 4314153..4314605 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AWN69_RS21475 (AWN69_21495) ycbZ 4314791..4316551 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=170588 AWN69_RS21450 WP_000839153.1 4311323..4311952(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain JW5437-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=170588 AWN69_RS21450 WP_000839153.1 4311323..4311952(-) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655 strain JW5437-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment