Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AXW77_RS07305 Genome accession   NZ_CP014344
Coordinates   1420144..1420455 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415144..1425455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW77_RS07285 (AXW77_07285) ctsE 1416013..1417572 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  AXW77_RS07290 (AXW77_07290) ctsX 1417562..1418149 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  AXW77_RS07295 (AXW77_07295) ctsP 1418153..1418761 (-) 609 WP_061099856.1 ATP-binding protein Machinery gene
  AXW77_RS07300 (AXW77_07300) ctsD 1418754..1420166 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AXW77_RS07305 (AXW77_07305) ctsR 1420144..1420455 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  AXW77_RS07310 (AXW77_07310) nifJ 1420479..1424039 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AXW77_RS07315 (AXW77_07315) - 1424132..1424773 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=170564 AXW77_RS07305 WP_002862131.1 1420144..1420455(-) (ctsR) [Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=170564 AXW77_RS07305 WP_002862131.1 1420144..1420455(-) (ctsR) [Campylobacter jejuni strain RM3194 voucher USDA:NWG_RM3194-1]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment