Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GS3922_RS09540 Genome accession   NZ_CP014342
Coordinates   1952027..1952974 (-) Length   315 a.a.
NCBI ID   WP_063166160.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain KCTC3922(T)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947027..1957974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS3922_RS09520 (GS3922_09520) - 1948331..1948951 (+) 621 WP_413229274.1 hypothetical protein -
  GS3922_RS09525 (GS3922_09525) - 1948984..1949949 (-) 966 WP_063166157.1 siderophore ABC transporter substrate-binding protein -
  GS3922_RS09530 (GS3922_09530) - 1950335..1951090 (-) 756 WP_063166158.1 ABC transporter ATP-binding protein -
  GS3922_RS09535 (GS3922_09535) - 1951084..1952034 (-) 951 WP_063166159.1 iron chelate uptake ABC transporter family permease subunit -
  GS3922_RS09540 (GS3922_09540) ceuB 1952027..1952974 (-) 948 WP_063166160.1 ABC transporter permease Machinery gene
  GS3922_RS18165 - 1953409..1953768 (-) 360 WP_225995646.1 hypothetical protein -
  GS3922_RS09550 (GS3922_09550) - 1953725..1954280 (-) 556 Protein_1934 aldehyde dehydrogenase family protein -
  GS3922_RS09555 (GS3922_09555) cysI 1954381..1956102 (-) 1722 WP_063166161.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  GS3922_RS09560 (GS3922_09560) - 1956129..1957958 (-) 1830 WP_063166162.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34829.84 Da        Isoelectric Point: 9.4611

>NTDB_id=170516 GS3922_RS09540 WP_063166160.1 1952027..1952974(-) (ceuB) [Geobacillus subterraneus strain KCTC3922(T)]
MKKWVLLLFGLSLLSLFVGVHDLSPRELWERDRDAWEIFLISRLPRLVSIIIAGASVSICGLIMQQLSQNKFVSPTTAGT
MDWARLGLLVSMILFASAAPIVKAAVAVLFAFVGTLLFMTVLDRVKYKDSVFIPLVGLMFGNIVGSVTTFLAYKYDLIQS
LSAWLQGDFSVMMQGRYEMLYISVPLMVVAYAYANRFTIAGMGEEMATNLGLRYRSIVYTGLIIVAIISSIEVLTVGSLP
FLGLIIPNIVSMYYGDHLRKVLPVTALAGALFVLVCDLLGRIVIYPYEIPIGLTVGVIGSGIFLYLLIRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=170516 GS3922_RS09540 WP_063166160.1 1952027..1952974(-) (ceuB) [Geobacillus subterraneus strain KCTC3922(T)]
ATGAAAAAATGGGTGTTGTTGCTTTTTGGATTATCGCTTCTTTCCTTATTTGTCGGGGTACATGATTTATCGCCCCGTGA
GCTGTGGGAGAGGGATCGTGATGCGTGGGAAATTTTCTTGATCAGCCGGCTGCCGCGGCTCGTCAGCATCATCATCGCTG
GGGCGAGCGTCAGCATTTGCGGCTTAATTATGCAACAGCTTAGCCAAAACAAGTTCGTGTCGCCGACGACGGCAGGAACG
ATGGACTGGGCTCGGCTTGGGCTATTAGTGTCCATGATTTTGTTCGCTTCGGCTGCGCCCATCGTCAAGGCCGCTGTTGC
TGTTTTGTTTGCATTTGTTGGAACACTGTTGTTCATGACGGTGTTAGATCGTGTCAAATATAAAGATTCGGTGTTTATTC
CGCTTGTCGGTCTCATGTTTGGGAATATCGTCGGCTCGGTGACAACGTTTTTGGCGTATAAATATGATTTGATCCAATCG
CTGTCCGCTTGGCTACAAGGCGATTTTTCGGTTATGATGCAAGGACGCTATGAGATGTTATACATTAGCGTCCCGCTTAT
GGTGGTCGCTTACGCGTATGCCAATCGGTTTACCATCGCAGGCATGGGAGAAGAGATGGCCACGAATTTAGGGCTTCGTT
ACCGATCGATTGTGTATACAGGACTGATCATTGTTGCGATCATTTCATCGATTGAAGTGTTGACGGTCGGCTCTCTGCCG
TTTTTAGGGTTGATCATTCCGAATATTGTGTCAATGTATTATGGCGATCATTTACGCAAAGTATTACCGGTAACTGCGCT
TGCTGGGGCGTTGTTCGTACTTGTTTGCGATTTGCTCGGTCGGATTGTCATTTATCCATATGAGATTCCGATCGGCTTAA
CAGTAGGGGTGATCGGGAGCGGCATCTTTTTATATTTGCTTATAAGGAGAACGAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.637

99.683

0.505

Multiple sequence alignment