Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GS3922_RS04210 Genome accession   NZ_CP014342
Coordinates   860907..862628 (+) Length   573 a.a.
NCBI ID   WP_063165325.1    Uniprot ID   Q6E1R7
Organism   Geobacillus subterraneus strain KCTC3922(T)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 855907..867628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS3922_RS04185 (GS3922_04185) - 856091..856321 (+) 231 WP_063165321.1 exodeoxyribonuclease VII small subunit -
  GS3922_RS04190 (GS3922_04190) - 856325..857218 (+) 894 WP_063165322.1 polyprenyl synthetase family protein -
  GS3922_RS04195 (GS3922_04195) dxs 857485..859377 (+) 1893 WP_063165323.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GS3922_RS04200 (GS3922_04200) - 859383..860231 (+) 849 WP_063165324.1 TlyA family RNA methyltransferase -
  GS3922_RS04205 (GS3922_04205) ahrC 860315..860764 (+) 450 WP_020960521.1 transcriptional regulator AhrC/ArgR -
  GS3922_RS04210 (GS3922_04210) recN 860907..862628 (+) 1722 WP_063165325.1 DNA repair protein RecN Machinery gene
  GS3922_RS04215 (GS3922_04215) spoIVB 862851..864146 (+) 1296 WP_063165326.1 SpoIVB peptidase -
  GS3922_RS04220 (GS3922_04220) spo0A 864398..865216 (+) 819 WP_063167306.1 sporulation transcription factor Spo0A -
  GS3922_RS04225 (GS3922_04225) - 865348..865767 (-) 420 WP_063165327.1 hypothetical protein -
  GS3922_RS17045 - 866061..866213 (-) 153 WP_081432649.1 YycC family protein -
  GS3922_RS04230 (GS3922_04230) - 866322..867050 (+) 729 WP_063165328.1 glycerophosphodiester phosphodiesterase -
  GS3922_RS04235 (GS3922_04235) - 867062..867310 (-) 249 WP_063165329.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63839.18 Da        Isoelectric Point: 4.9290

>NTDB_id=170508 GS3922_RS04210 WP_063165325.1 860907..862628(+) (recN) [Geobacillus subterraneus strain KCTC3922(T)]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDERHPCCQK
CAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTTAVLREIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEAAEAL
ARYRAVYEQHEALAKKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYEAIQKSYGALAG
EGRGLDSIREAMSHLDDVAAMDAALKEAHETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTGDLLIEAKRVTNVRQTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLLIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=170508 GS3922_RS04210 WP_063165325.1 860907..862628(+) (recN) [Geobacillus subterraneus strain KCTC3922(T)]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATTATTGAATCGTTATCGTTGTCCTTTGACAAAGGGCTGACAGTGTT
AACCGGCGAAACAGGGGCGGGCAAATCGATCATCATCGACGCGATTCATCTGTTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGACGATGAGCGTCATCCATGTTGCCAAAAA
TGCGCCGAGGTCGGCATCGATGCGAGCGAAGGGATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACGACCGCCGTACTGCGCGAAATTGGAGCGACGCTTGTCGATATTCACGGCCAGCATG
AACATCAAGAGCTGATGGATCCGTCCCGCCACTTGCCGCTTCTTGATGAATTCGGCGGCGCGGAGGCGGCTGAAGCGCTC
GCACGCTACCGCGCTGTGTATGAACAGCATGAAGCGCTGGCGAAAAAGTTGAAAAAGCTGAGTGAAAATGAGCAGCAAAT
GGCGCATCGGCTCGATCTATTGACATTTCAGTTGCGCGAAATCGAACAGGCGGCACTCGAGCCGGGAGAAGACGAGCGGC
TGATGGAAGAAAAAGTACGCATTGTCAATTTTCAAAAGATATATGAAGCCATCCAGAAAAGCTATGGGGCGCTTGCCGGC
GAAGGGCGCGGCCTTGACTCGATTCGAGAGGCGATGAGCCACCTCGATGATGTCGCTGCGATGGATGCTGCGCTGAAGGA
AGCGCACGAAACAGTCGCCAACAGCTACTACTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAACTTG
AATACGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCCGAAATTCAGCAGTTAAAACGGAAATACGGTGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGCGAGACGCATGTGCATGA
ACTTGAGCGGCAGCTTGCGGCGGTGACGGGCGATTTGCTGATTGAGGCGAAACGCGTAACCAACGTCCGGCAGACGTACG
CTCGGGAGCTGATCGAGCGCATTCACCAAGAGTTGAAAGATTTGTACATGGAGAAAACGCAGTTCGACATCATTTTTGCG
AAGCGTGAAGGACCGCTCGATGCCCCGTTAGTCGACGGCGTGCCAGTCAAGTTTCACGAAGATGGCATCGACGTCGTCGA
GTTTTACATTTCGACGAACGTCGGTGAGCCGTTGAAGCCGCTCGCGAAAGTGGCTTCGGGCGGTGAATTGTCACGGATCA
TGCTGGCGTTGAAAACGATTTTTTCCAAACACCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACGGGCGTCAGC
GGCCGCGTCGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCATCTGCC
GCAAGTGGCCGCTATGGCGGACACCCATTTATTGATCGCCAAAGAAACGGACGGAACGCGGACGAAGACAGTGGTGAAAA
AGTTGGATGAGGAAGAGAAGGTGAAAGAAATCGGACGGATGATTTCCGGCGTCGAAATGACGGAGCTGACAAAACAGCAC
GCCAAAGAGCTGTTGGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6E1R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.369

100

0.625

Multiple sequence alignment