Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GS3922_RS03375 Genome accession   NZ_CP014342
Coordinates   708116..710470 (+) Length   784 a.a.
NCBI ID   WP_063165179.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain KCTC3922(T)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 703116..715470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS3922_RS03350 (GS3922_03350) - 703959..704609 (+) 651 WP_063165174.1 YczE/YyaS/YitT family protein -
  GS3922_RS03355 (GS3922_03355) cymR 704620..705036 (+) 417 WP_063165175.1 cysteine metabolism transcriptional regulator CymR -
  GS3922_RS03360 (GS3922_03360) - 705059..706201 (+) 1143 WP_063165176.1 cysteine desulfurase family protein -
  GS3922_RS03365 (GS3922_03365) mnmA 706216..707331 (+) 1116 WP_063165177.1 tRNA 2-thiouridine(34) synthase MnmA -
  GS3922_RS03370 (GS3922_03370) - 707439..708098 (+) 660 WP_063165178.1 tetratricopeptide repeat protein -
  GS3922_RS03375 (GS3922_03375) recD2 708116..710470 (+) 2355 WP_063165179.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GS3922_RS03380 (GS3922_03380) - 710496..710969 (+) 474 WP_063165180.1 PRC-barrel domain-containing protein -
  GS3922_RS03385 (GS3922_03385) - 710985..711176 (+) 192 WP_008881018.1 hypothetical protein -
  GS3922_RS17015 - 711188..711322 (+) 135 WP_081208394.1 YrzQ family protein -
  GS3922_RS03390 (GS3922_03390) - 711444..712505 (+) 1062 WP_063165181.1 AI-2E family transporter -
  GS3922_RS03395 (GS3922_03395) alaS 712822..715458 (+) 2637 WP_063165182.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 86087.54 Da        Isoelectric Point: 4.9494

>NTDB_id=170503 GS3922_RS03375 WP_063165179.1 708116..710470(+) (recD2) [Geobacillus subterraneus strain KCTC3922(T)]
MQEQQSLALDGRTFMKGTCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYVFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVEALGENAIATILRDPEALRRVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYQLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKEEELIGRMAELLGGRENGAVDGQAIGQTLLMLSEEGKMIMEQSRCYLPSLYFAEKGIASNIQRLLRQTPPS
AFAESEFLLALGALEERLGMQYAPQQKEAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALHGLSLDPADYKNDEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGVEGFSRDENEPIAGKLLVVDEVSMVDTWLANQLLKAVPDGMQVIFVG
DEDQLPSVGPGQVLKDLLESGVVPSVKLTEVYRQAEGSSIIELAHAMKRGVVPADLTAPKADRSFIRCRAGQVADVVRQI
ADNARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQGLFNPPADGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGEV
VAIFYAKENTEKQDLLVVSFDGVEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSKQ
FLILCGEEEAFRLGVAQRGDGARRTALAEKLAAASFVEGELPLEDANTGMENVTPYDFMGDEPS

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=170503 GS3922_RS03375 WP_063165179.1 708116..710470(+) (recD2) [Geobacillus subterraneus strain KCTC3922(T)]
TTGCAAGAGCAGCAATCGCTCGCGCTCGATGGACGCACGTTTATGAAAGGAACGTGTTTGGCCGTCATTTTCCATAACGA
AGAAACGTTATATACGGTCGTCCGCATCCGTGTCGAAGAAACAAATGAAGCGGCTGCGGAGGAGGAAGTGGTCGTCACCG
GTTATTTTCCTCGTTTAAATGAGGGGGACGTGTACGTTTTTTATGGGCAGTTCCGCCAGCATCCGCGCTTTGGCCGCCAA
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCAAACACGAAAGAAGGAGTTATCCATTATTTGTCAAGCGGCTTGTTTAA
AGGAATCGGAAAAAAGACGGCGGCAGCGATTGTGGAGGCGCTCGGCGAAAACGCGATCGCCACGATTTTGCGCGATCCGG
AGGCGCTTAGGCGCGTGCCGAAGCTGACGAAGCAAAAAGCGAAGCAATTGTATGAAACGCTTTGCGCCCACGAAGGGCTC
GAGCAGACGATGATCGCCCTCGCCCAGCTCGGCTTCGGTCCGCAGCTGGCGATGAAAATTTACCAAGTATACGGCGAAGA
GACGATGGACATCATTCATGAAAACCCGTACCAGCTCGTCGAAGACATTGAAGGGATCGGCTTTGGCCGCGCCGATGAGC
TTGGGCGGCAGCTCGGCATTTCCGGCAGCCACCCGGCCCGGCTGCGCGCCGCCTGCCTGTTTGTCCTTGAGCAGGCATGC
CTGCAAGAAGGGCACGTCTATATGAAAGAGGAAGAGCTCATCGGCCGCATGGCGGAGCTGCTTGGCGGAAGGGAAAACGG
AGCGGTCGATGGACAAGCCATCGGGCAGACGCTCCTCATGTTAAGCGAAGAAGGGAAGATGATCATGGAGCAAAGCCGCT
GTTATCTTCCCTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCAAACATTCAGCGGCTGCTTAGGCAAACGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTTGCGCTCGGGGCGCTTGAGGAGCGGCTCGGGATGCAATACGCGCCCCAGCAAAA
AGAGGCAATCCAACAGGCCCTTTCTTCGCCGCTCTTTATTTTGACCGGCGGTCCGGGAACCGGAAAAACAACGGTCATTA
AAGGCATCGTCGAACTGTTTGCCGCCTTACACGGCCTGTCGCTCGACCCTGCCGATTACAAAAACGATGAACCGTTTCCC
GTGCTGCTCGCCGCTCCGACCGGACGGGCGGCAAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCAACGATTCACCG
GCTGCTTGGCTGGAATGGAGTGGAAGGATTCAGCCGCGATGAAAATGAGCCGATTGCCGGCAAGCTGCTTGTCGTCGATG
AAGTGTCGATGGTCGATACGTGGTTGGCCAATCAGCTGTTAAAAGCCGTGCCTGACGGAATGCAAGTCATCTTCGTTGGC
GACGAGGATCAGCTGCCATCGGTCGGCCCCGGGCAAGTGTTGAAAGATTTGCTTGAGTCGGGCGTCGTTCCATCGGTCAA
ACTGACCGAGGTGTACCGCCAAGCGGAAGGATCATCGATCATCGAGCTCGCCCATGCGATGAAGCGCGGCGTCGTGCCGG
CCGACTTGACCGCCCCGAAGGCGGATCGTTCGTTCATTCGTTGCCGCGCCGGACAAGTGGCTGATGTTGTGCGGCAAATT
GCTGACAACGCGCGCAACAAAGGGTTTTCCGTCAAGGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCGGCCGGCAT
CGATCAGCTGAACAAAGTGCTGCAGGGGCTGTTTAACCCGCCGGCTGACGGGAAACGGGAGCTTTCCGTCGGCGACGTTG
TGTACCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAAGACAATGTGTTTAACGGCGATATCGGCGAAGTC
GTTGCCATTTTTTACGCCAAAGAAAATACGGAAAAGCAAGACTTGCTTGTTGTCTCGTTTGACGGCGTTGAAGTGACATA
CACAAGGCAAGATTTAGCGCAAATTACCCATGCGTATTGCTGCTCGGTCCATAAAGCGCAAGGGAGCGAGTTTCCAATCG
TCATTTTGCCTGTTGTCAAAAGCTACTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAGCAG
TTTCTTATTTTATGCGGTGAAGAAGAAGCGTTCCGGTTGGGCGTTGCCCAACGCGGCGACGGAGCGCGCCGGACAGCGCT
CGCCGAAAAGTTGGCGGCTGCGTCGTTTGTTGAGGGGGAACTGCCGCTTGAGGATGCGAATACCGGGATGGAAAACGTTA
CGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

Helix-hairpin-helix domain (HHH_5)

(107-153)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.95

100

0.607

Multiple sequence alignment