Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BKM67_RS06740 Genome accession   NZ_CP017667
Coordinates   1347727..1349940 (-) Length   737 a.a.
NCBI ID   WP_105183912.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342727..1354940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS06710 (BKM67_06560) - 1342854..1343648 (-) 795 WP_074391872.1 Nif3-like dinuclear metal center hexameric protein -
  BKM67_RS06715 (BKM67_06565) - 1343638..1344321 (-) 684 WP_105183908.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  BKM67_RS06720 (BKM67_06570) - 1344323..1344997 (-) 675 WP_105183909.1 DnaD domain-containing protein -
  BKM67_RS06725 (BKM67_06575) metA 1345007..1345948 (-) 942 WP_105183910.1 homoserine O-succinyltransferase -
  BKM67_RS06730 (BKM67_06580) - 1346052..1346564 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  BKM67_RS06735 (BKM67_06585) - 1346579..1347748 (-) 1170 WP_105183911.1 DUF3114 domain-containing protein -
  BKM67_RS06740 (BKM67_06590) recJ 1347727..1349940 (-) 2214 WP_105183912.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BKM67_RS06745 (BKM67_06595) cls 1350096..1351643 (-) 1548 WP_105183913.1 cardiolipin synthase -
  BKM67_RS06750 (BKM67_06600) - 1351816..1354026 (-) 2211 WP_105183914.1 copper-translocating P-type ATPase -
  BKM67_RS06755 (BKM67_06605) - 1354170..1354925 (-) 756 WP_024384797.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82705.47 Da        Isoelectric Point: 4.5369

>NTDB_id=170444 BKM67_RS06740 WP_105183912.1 1347727..1349940(-) (recJ) [Streptococcus suis strain 1081]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFKKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRRYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=170444 BKM67_RS06740 WP_105183912.1 1347727..1349940(-) (recJ) [Streptococcus suis strain 1081]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGTGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCAAATCAATCAGTTTACAAGTATT
TTATTGAGCAGCAGGGGATTTCTCTAATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCCGAGGGAAATTATCCCTTCAAACATTTGGCAGGCTGCGGTGTAGCCTTCAAATTGGCCTGCGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTTATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGGCTCGACGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAATCCAGGTGTTTTAGGGATTGTAGCAGGACGCTTACTAGAAGAATTGCAGCAACCTGTTATTG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCGGTTGATATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTCTTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCAAGAAGCTTGCGCCTTATGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCAGGATTTGATGTGGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACTAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAC
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTCGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTCCGCTACAAACTGAAAGATTTGGCTGGTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTCGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCGCAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-432)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.69

99.864

0.726
  recJ Bacillus subtilis subsp. subtilis str. 168

38.369

100

0.389