Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BKM67_RS02675 Genome accession   NZ_CP017667
Coordinates   538692..540353 (+) Length   553 a.a.
NCBI ID   WP_002942943.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533692..545353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS02645 (BKM67_02610) - 533980..534888 (-) 909 WP_024389095.1 neutral zinc metallopeptidase -
  BKM67_RS02650 (BKM67_02615) xseA 535055..536398 (+) 1344 WP_105184163.1 exodeoxyribonuclease VII large subunit -
  BKM67_RS02655 (BKM67_02620) - 536373..536588 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  BKM67_RS02660 (BKM67_02625) - 536588..537457 (+) 870 WP_063725330.1 polyprenyl synthetase family protein -
  BKM67_RS02665 (BKM67_02630) - 537450..538271 (+) 822 WP_024393822.1 TlyA family RNA methyltransferase -
  BKM67_RS02670 (BKM67_02635) - 538264..538689 (+) 426 WP_002936261.1 arginine repressor -
  BKM67_RS02675 (BKM67_02640) recN 538692..540353 (+) 1662 WP_002942943.1 DNA repair protein RecN Machinery gene
  BKM67_RS02680 (BKM67_02645) - 540447..541280 (+) 834 WP_024386337.1 DegV family protein -
  BKM67_RS02685 (BKM67_02650) - 541273..542106 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  BKM67_RS02690 (BKM67_02655) - 542078..542674 (+) 597 WP_105184164.1 YpmS family protein -
  BKM67_RS02695 (BKM67_02660) - 542764..543039 (+) 276 WP_024385016.1 HU family DNA-binding protein -
  BKM67_RS02700 (BKM67_02665) - 543128..544270 (-) 1143 WP_112477612.1 site-specific integrase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62729.91 Da        Isoelectric Point: 4.6542

>NTDB_id=170422 BKM67_RS02675 WP_002942943.1 538692..540353(+) (recN) [Streptococcus suis strain 1081]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=170422 BKM67_RS02675 WP_002942943.1 538692..540353(+) (recN) [Streptococcus suis strain 1081]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGTTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGCCAACATGACCAGG
AAGAATTGATGAAGTCCCAGCACCATATCCGTCTTTTGGATAGTTTCGGGGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTTGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGTGAAGACTTCAAACCACTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAGACTT
CCATCGTCTTTGACGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45