Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BKM67_RS02345 Genome accession   NZ_CP017667
Coordinates   463687..464463 (+) Length   258 a.a.
NCBI ID   WP_013730191.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 458687..469463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS11005 - 460487..460657 (-) 171 Protein_399 transposase -
  BKM67_RS02335 (BKM67_02305) - 460779..461981 (-) 1203 WP_109371051.1 IS110 family transposase -
  BKM67_RS02340 (BKM67_02310) rlmD 462297..463649 (-) 1353 WP_024401993.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  BKM67_RS02345 (BKM67_02315) recX 463687..464463 (+) 777 WP_013730191.1 recombination regulator RecX Regulator
  BKM67_RS02350 (BKM67_02320) - 464539..465072 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  BKM67_RS02355 (BKM67_02325) - 465130..465447 (+) 318 WP_002942715.1 DUF960 domain-containing protein -
  BKM67_RS02360 (BKM67_02330) - 465547..466278 (+) 732 WP_024384348.1 GntR family transcriptional regulator -
  BKM67_RS02365 (BKM67_02335) - 466419..467129 (-) 711 WP_015646515.1 GntR family transcriptional regulator -
  BKM67_RS02370 (BKM67_02340) - 467351..469123 (+) 1773 WP_044683662.1 beta-galactosidase family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30429.95 Da        Isoelectric Point: 9.2585

>NTDB_id=170418 BKM67_RS02345 WP_013730191.1 463687..464463(+) (recX) [Streptococcus suis strain 1081]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQTVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=170418 BKM67_RS02345 WP_013730191.1 463687..464463(+) (recX) [Streptococcus suis strain 1081]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTGTATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCTTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
CTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGGCTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAGTTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGGTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATTGCCA
AGGAACTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTA
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGACTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364