Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GT3570_RS04010 Genome accession   NZ_CP014335
Coordinates   790614..792437 (+) Length   607 a.a.
NCBI ID   WP_025038851.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans strain KCTC 3570     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 785614..797437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3570_RS03990 (GT3570_03990) - 785942..786601 (-) 660 WP_062898474.1 TerC family protein -
  GT3570_RS03995 (GT3570_03995) mecA 786812..787492 (+) 681 WP_011230320.1 adaptor protein MecA -
  GT3570_RS04000 (GT3570_04000) cls 787589..789097 (+) 1509 WP_011230321.1 cardiolipin synthase -
  GT3570_RS04005 (GT3570_04005) - 789286..790614 (+) 1329 WP_011230322.1 competence protein CoiA -
  GT3570_RS04010 (GT3570_04010) pepF 790614..792437 (+) 1824 WP_025038851.1 oligoendopeptidase F Regulator
  GT3570_RS04015 (GT3570_04015) - 792451..792648 (-) 198 WP_011230324.1 hypothetical protein -
  GT3570_RS04020 (GT3570_04020) spxH 793074..793967 (-) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  GT3570_RS04025 (GT3570_04025) - 793960..794373 (-) 414 WP_011230326.1 hypothetical protein -
  GT3570_RS04030 (GT3570_04030) - 794476..795099 (-) 624 WP_011230327.1 lytic transglycosylase domain-containing protein -
  GT3570_RS04035 (GT3570_04035) - 795096..795689 (-) 594 WP_011230328.1 CYTH domain-containing protein -
  GT3570_RS04040 (GT3570_04040) - 795825..796202 (+) 378 WP_011230329.1 hypothetical protein -
  GT3570_RS04045 (GT3570_04045) - 796340..796978 (+) 639 WP_011230330.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70300.44 Da        Isoelectric Point: 4.9959

>NTDB_id=170396 GT3570_RS04010 WP_025038851.1 790614..792437(+) (pepF) [Geobacillus thermoleovorans strain KCTC 3570]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NMLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIAAIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLRTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLSALYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=170396 GT3570_RS04010 WP_025038851.1 790614..792437(+) (pepF) [Geobacillus thermoleovorans strain KCTC 3570]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCTGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAATTCAAACAAGTGAAGGCAATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGCCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCAGAAGAGGAGGCGATCTTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATATGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGAGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAATCTAATCGCCGCGATTCACGAACATTTGCCGCTGTTGCATCGGT
ACGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGATTTGTACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCATATGCGCATTATTCAATTTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTACTTGCTGAGAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAAGCGTTGACGGCCGAAACGTTGAGCGCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTACGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTCAGTAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTGAAAGCCGGCAGCTCTGATTACCCGATTGAAGTGTTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAACGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

97.694

0.499

Multiple sequence alignment