Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BKM67_RS00215 Genome accession   NZ_CP017667
Coordinates   28558..29340 (+) Length   260 a.a.
NCBI ID   WP_024413296.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23558..34340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS00195 (BKM67_00190) mreD 24391..24894 (+) 504 WP_228381042.1 rod shape-determining protein MreD -
  BKM67_RS00200 (BKM67_00195) - 24979..26235 (+) 1257 WP_105183593.1 CHAP domain-containing protein -
  BKM67_RS00205 (BKM67_00200) - 26338..27306 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  BKM67_RS00210 (BKM67_00205) - 27393..28571 (+) 1179 WP_044769911.1 pyridoxal phosphate-dependent aminotransferase -
  BKM67_RS00215 (BKM67_00210) recO 28558..29340 (+) 783 WP_024413296.1 DNA repair protein RecO Machinery gene
  BKM67_RS00220 (BKM67_00215) plsX 29337..30344 (+) 1008 WP_105183592.1 phosphate acyltransferase PlsX -
  BKM67_RS00225 (BKM67_00220) - 30337..30585 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  BKM67_RS00230 (BKM67_00225) purC 30703..31410 (+) 708 WP_024395332.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30505.00 Da        Isoelectric Point: 5.4193

>NTDB_id=170387 BKM67_RS00215 WP_024413296.1 28558..29340(+) (recO) [Streptococcus suis strain 1081]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLMGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=170387 BKM67_RS00215 WP_024413296.1 28558..29340(+) (recO) [Streptococcus suis strain 1081]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCATGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCTATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669