Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BKM66_RS05400 Genome accession   NZ_CP017666
Coordinates   1086650..1088386 (-) Length   578 a.a.
NCBI ID   WP_105183839.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081650..1093386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS05385 (BKM66_05255) - 1082505..1083791 (-) 1287 WP_105183837.1 homoserine dehydrogenase -
  BKM66_RS05390 (BKM66_05260) - 1083896..1084819 (+) 924 WP_024406306.1 polysaccharide deacetylase family protein -
  BKM66_RS05395 (BKM66_05265) rcrQ 1084872..1086641 (-) 1770 WP_105183838.1 ABC transporter ATP-binding protein Regulator
  BKM66_RS05400 (BKM66_05270) rcrP 1086650..1088386 (-) 1737 WP_105183839.1 ABC transporter ATP-binding protein Regulator
  BKM66_RS05405 (BKM66_05275) - 1088462..1088704 (-) 243 WP_012028079.1 KH domain-containing protein -
  BKM66_RS05410 (BKM66_05280) rpsP 1088726..1088998 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  BKM66_RS05415 (BKM66_05285) - 1089122..1089430 (-) 309 WP_024384451.1 DUF4298 domain-containing protein -
  BKM66_RS05420 (BKM66_05290) pcp 1089430..1090077 (-) 648 WP_105183840.1 pyroglutamyl-peptidase I -
  BKM66_RS05425 (BKM66_05295) - 1090074..1090835 (-) 762 WP_044758868.1 class I SAM-dependent methyltransferase -
  BKM66_RS05430 (BKM66_05300) - 1090906..1091220 (-) 315 WP_105119540.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65154.44 Da        Isoelectric Point: 5.1073

>NTDB_id=170342 BKM66_RS05400 WP_105183839.1 1086650..1088386(-) (rcrP) [Streptococcus suis strain 0061]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRITLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALEPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRARLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=170342 BKM66_RS05400 WP_105183839.1 1086650..1088386(-) (rcrP) [Streptococcus suis strain 0061]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTACT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGAATTGTTGGACGAATAACGCTTGCCTATGCGGCTGGTCAGTTG
ACGACCAACATCGTAAAAGATATTCGAAATGATTTGTACGAGAAAATTCAGGACTATTCACACCATGAATATGAACAGAT
TGGTGTTTCTTCTCTGGTTGCCCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTGTTGAAATTAG
GTATTATTACCCCCTTGATGATGATTGCCTCTGTCATTATGACCTTGGTAACCAGTCCGAGTCTAGCTTGGACAGTTGCA
GTGGCCATGCCTTTCCTAGTTTTTGTTATTTTCTATGTAGCAACCAAAACTCGTCCCTTATCAGAAAAGCAACAAAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGTCTGACAGAA
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCTTTGGAGCCCTTGAAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGGGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGTTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAGAAGTTTGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCTGATATTTATATCTTTGATGATTCCTTCTCAGCCTTGGATTATAAGACGGATGC
CATTTTGAGAGCTCGTTTGAAGGAAGTAACAGAAAATGCGACGGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398