Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BKM66_RS05395 Genome accession   NZ_CP017666
Coordinates   1084872..1086641 (-) Length   589 a.a.
NCBI ID   WP_105183838.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079872..1091641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS05375 (BKM66_05245) murB 1080602..1081510 (-) 909 WP_105183835.1 UDP-N-acetylmuramate dehydrogenase -
  BKM66_RS05380 (BKM66_05250) thrB 1081641..1082501 (-) 861 WP_105183836.1 homoserine kinase -
  BKM66_RS05385 (BKM66_05255) - 1082505..1083791 (-) 1287 WP_105183837.1 homoserine dehydrogenase -
  BKM66_RS05390 (BKM66_05260) - 1083896..1084819 (+) 924 WP_024406306.1 polysaccharide deacetylase family protein -
  BKM66_RS05395 (BKM66_05265) rcrQ 1084872..1086641 (-) 1770 WP_105183838.1 ABC transporter ATP-binding protein Regulator
  BKM66_RS05400 (BKM66_05270) rcrP 1086650..1088386 (-) 1737 WP_105183839.1 ABC transporter ATP-binding protein Regulator
  BKM66_RS05405 (BKM66_05275) - 1088462..1088704 (-) 243 WP_012028079.1 KH domain-containing protein -
  BKM66_RS05410 (BKM66_05280) rpsP 1088726..1088998 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  BKM66_RS05415 (BKM66_05285) - 1089122..1089430 (-) 309 WP_024384451.1 DUF4298 domain-containing protein -
  BKM66_RS05420 (BKM66_05290) pcp 1089430..1090077 (-) 648 WP_105183840.1 pyroglutamyl-peptidase I -
  BKM66_RS05425 (BKM66_05295) - 1090074..1090835 (-) 762 WP_044758868.1 class I SAM-dependent methyltransferase -
  BKM66_RS05430 (BKM66_05300) - 1090906..1091220 (-) 315 WP_105119540.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65816.91 Da        Isoelectric Point: 5.5789

>NTDB_id=170341 BKM66_RS05395 WP_105183838.1 1084872..1086641(-) (rcrQ) [Streptococcus suis strain 0061]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMASGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDISLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
SDLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFLVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKTANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=170341 BKM66_RS05395 WP_105183838.1 1084872..1086641(-) (rcrQ) [Streptococcus suis strain 0061]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGACATGGCAAGTGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGT
GCTCTTCTATATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGCGCAACCAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGATAAGCACCAATATGGTGATTTACTCGGGCGTT
TTACAAGCGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGTTTTCTTCAGCTCGTCAATGCTGTACTAACCCTTTCT
TTAGCCATTTTTATGTGTTTTTGGTTGGATATATCCCTGGCTCTCGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGGAAATCCCAGCCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGTCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
TCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGTACATTGACAGTCGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTTAGTCCTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCGGGTGCTATCAAGGTGGATGGTCAGGATATTCGGAATATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCCTGGCTCTACGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAAGCTGCCAAAACCGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCCATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTTTTGATTCAAAAGGCTATGAAACGATTGATGAAGG
GGCGGACAAGTTTCGTCATCGCCCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435