Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BKM66_RS04990 Genome accession   NZ_CP017666
Coordinates   1005673..1006338 (+) Length   221 a.a.
NCBI ID   WP_105184250.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000673..1011338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS10355 (BKM66_04860) - 1001769..1001909 (+) 141 WP_032532220.1 hypothetical protein -
  BKM66_RS04965 (BKM66_04865) - 1001922..1002311 (+) 390 WP_105184248.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  BKM66_RS04970 (BKM66_04870) - 1002320..1003072 (+) 753 WP_015646831.1 ATP-binding cassette domain-containing protein -
  BKM66_RS04975 (BKM66_04875) - 1003073..1005043 (+) 1971 WP_105184249.1 ABC transporter permease -
  BKM66_RS04980 (BKM66_04880) - 1005136..1005375 (+) 240 WP_024418295.1 DUF6290 family protein -
  BKM66_RS04985 (BKM66_04885) - 1005365..1005631 (+) 267 WP_029171768.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BKM66_RS04990 (BKM66_04890) braR 1005673..1006338 (+) 666 WP_105184250.1 response regulator transcription factor Regulator
  BKM66_RS04995 (BKM66_04895) - 1006335..1007276 (+) 942 WP_105184251.1 sensor histidine kinase -
  BKM66_RS05000 (BKM66_04900) - 1007351..1008859 (+) 1509 WP_105123656.1 phosphomannomutase/phosphoglucomutase -
  BKM66_RS05010 (BKM66_04905) xerS 1009200..1010270 (-) 1071 WP_105115640.1 tyrosine recombinase XerS Machinery gene
  BKM66_RS05015 (BKM66_04910) - 1010443..1010967 (-) 525 WP_105119906.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25440.30 Da        Isoelectric Point: 4.7792

>NTDB_id=170338 BKM66_RS04990 WP_105184250.1 1005673..1006338(+) (braR) [Streptococcus suis strain 0061]
MKKEKIYIVEDDEIIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFTNELELVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=170338 BKM66_RS04990 WP_105184250.1 1005673..1006338(+) (braR) [Streptococcus suis strain 0061]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATAATTGTACAGCTCTTGAAGCAGCATCTGGGAAAATCATA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTGGCGGAAATTAAACCAGACTTAGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGTGATGATTTTGTGTCAAAGCCTTTTTCACTGGG
AATTTTGGATGCCAAAATTGGAGCCTTCCTGCGTCGGGTCAATCAATTCAGCAAATCAACCGATTTGTCTATCGACCAGT
TCCAGCTTAGTTTGGACGGGCGATTTACAAACGAATTGGAACTGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
TCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471