Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JEONG1266_RS14935 Genome accession   NZ_CP014314
Coordinates   2765828..2766457 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157:H7 strain JEONG-1266     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2755191..2777630 2765828..2766457 within 0


Gene organization within MGE regions


Location: 2755191..2777630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEONG1266_RS14875 (JEONG1266_14880) yccA 2756177..2756836 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  JEONG1266_RS14880 (JEONG1266_14885) tusE 2756927..2757256 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  JEONG1266_RS14885 (JEONG1266_14890) yccX 2757253..2757531 (-) 279 WP_000048252.1 acylphosphatase -
  JEONG1266_RS14890 (JEONG1266_14895) rlmI 2757626..2758816 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  JEONG1266_RS14895 (JEONG1266_14900) hspQ 2758874..2759191 (+) 318 WP_001295356.1 heat shock protein HspQ -
  JEONG1266_RS14900 (JEONG1266_14905) yccU 2759236..2759649 (-) 414 WP_000665217.1 CoA-binding protein -
  JEONG1266_RS14910 (JEONG1266_14915) yccT 2759822..2760484 (+) 663 WP_000847791.1 DUF2057 family protein -
  JEONG1266_RS14915 (JEONG1266_14920) mgsA 2760580..2761038 (+) 459 WP_000424181.1 methylglyoxal synthase -
  JEONG1266_RS14920 (JEONG1266_14925) helD 2761070..2763124 (-) 2055 WP_001301436.1 DNA helicase IV -
  JEONG1266_RS14925 (JEONG1266_14930) yccF 2763247..2763693 (+) 447 WP_001261230.1 YccF domain-containing protein -
  JEONG1266_RS14930 (JEONG1266_14935) yccS 2763703..2765865 (+) 2163 WP_000875023.1 YccS family putative transporter -
  JEONG1266_RS14935 (JEONG1266_14940) sxy/tfoX 2765828..2766457 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JEONG1266_RS14940 (JEONG1266_14945) sulA 2766676..2767185 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JEONG1266_RS14950 (JEONG1266_14955) ompA 2767542..2768582 (+) 1041 WP_000750416.1 porin OmpA -
  JEONG1266_RS14955 (JEONG1266_14960) matP 2768657..2769109 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JEONG1266_RS14960 (JEONG1266_14965) ycbZ 2769295..2771055 (+) 1761 WP_000156526.1 Lon protease family protein -
  JEONG1266_RS14965 (JEONG1266_14970) fabA 2771124..2771642 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  JEONG1266_RS14970 (JEONG1266_14975) rmf 2771712..2771879 (-) 168 WP_000828648.1 ribosome modulation factor -
  JEONG1266_RS14975 (JEONG1266_14980) pqiC 2772135..2772698 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  JEONG1266_RS14980 (JEONG1266_14985) pqiB 2772695..2774335 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  JEONG1266_RS14985 (JEONG1266_14990) pqiA 2774340..2775593 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  JEONG1266_RS14990 (JEONG1266_14995) uup 2775723..2777630 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=170264 JEONG1266_RS14935 WP_000839159.1 2765828..2766457(-) (sxy/tfoX) [Escherichia coli O157:H7 strain JEONG-1266]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=170264 JEONG1266_RS14935 WP_000839159.1 2765828..2766457(-) (sxy/tfoX) [Escherichia coli O157:H7 strain JEONG-1266]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment