Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AXW78_RS20485 Genome accession   NZ_CP014282
Coordinates   4103926..4104672 (-) Length   248 a.a.
NCBI ID   WP_000487011.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain Bt185     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4098926..4109672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS20470 (AXW78_20470) dnaG 4099688..4101484 (-) 1797 WP_000528221.1 DNA primase -
  AXW78_RS20475 (AXW78_20475) - 4102344..4103156 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  AXW78_RS20480 (AXW78_20480) - 4103186..4103818 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  AXW78_RS20485 (AXW78_20485) recO 4103926..4104672 (-) 747 WP_000487011.1 DNA repair protein RecO Machinery gene
  AXW78_RS20490 (AXW78_20490) - 4104706..4104849 (-) 144 WP_000883924.1 YqzL family protein -
  AXW78_RS20495 (AXW78_20495) era 4105026..4105931 (-) 906 WP_001080229.1 GTPase Era -
  AXW78_RS20500 (AXW78_20500) - 4105924..4106322 (-) 399 WP_001086285.1 cytidine deaminase -
  AXW78_RS20505 (AXW78_20505) - 4106422..4106775 (-) 354 WP_000715462.1 diacylglycerol kinase family protein -
  AXW78_RS20510 (AXW78_20510) ybeY 4106772..4107242 (-) 471 WP_000054682.1 rRNA maturation RNase YbeY -
  AXW78_RS20515 (AXW78_20515) - 4107239..4109382 (-) 2144 Protein_4076 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28608.17 Da        Isoelectric Point: 8.0566

>NTDB_id=170201 AXW78_RS20485 WP_000487011.1 4103926..4104672(-) (recO) [Bacillus thuringiensis strain Bt185]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=170201 AXW78_RS20485 WP_000487011.1 4103926..4104672(-) (recO) [Bacillus thuringiensis strain Bt185]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCACGAGGAGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTACTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCAGTATTAGGGATGCGCCCGTACTTTGATACTTGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment