Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AXW78_RS12510 Genome accession   NZ_CP014282
Coordinates   2494176..2494454 (+) Length   92 a.a.
NCBI ID   WP_061884209.1    Uniprot ID   A0A9W3YKH5
Organism   Bacillus thuringiensis strain Bt185     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2489176..2499454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS12480 (AXW78_12480) - 2490065..2491273 (+) 1209 WP_061884204.1 AimR family lysis-lysogeny pheromone receptor -
  AXW78_RS34390 - 2491300..2491455 (+) 156 WP_165375022.1 hypothetical protein -
  AXW78_RS12490 (AXW78_12490) - 2491719..2492069 (-) 351 WP_061884206.1 helix-turn-helix transcriptional regulator -
  AXW78_RS12495 (AXW78_12495) - 2492249..2492473 (+) 225 WP_061884207.1 helix-turn-helix transcriptional regulator -
  AXW78_RS12500 (AXW78_12500) - 2492514..2492780 (+) 267 WP_000522182.1 helix-turn-helix domain-containing protein -
  AXW78_RS34395 - 2492780..2492935 (+) 156 WP_081113949.1 hypothetical protein -
  AXW78_RS12505 (AXW78_12505) - 2493156..2494172 (+) 1017 WP_061884208.1 DnaD domain protein -
  AXW78_RS12510 (AXW78_12510) abrB 2494176..2494454 (+) 279 WP_061884209.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AXW78_RS12515 (AXW78_12515) - 2494447..2494806 (+) 360 WP_061884210.1 hypothetical protein -
  AXW78_RS32210 - 2494825..2494992 (+) 168 WP_000754942.1 DUF3954 domain-containing protein -
  AXW78_RS12520 (AXW78_12520) - 2495018..2495269 (+) 252 WP_061884211.1 hypothetical protein -
  AXW78_RS12525 (AXW78_12525) - 2495290..2495772 (+) 483 WP_061884212.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  AXW78_RS12530 (AXW78_12530) - 2495886..2496749 (-) 864 WP_061884213.1 hypothetical protein -
  AXW78_RS35270 - 2497487..2497735 (-) 249 Protein_2460 exosporium leader peptide-containing protein -
  AXW78_RS12540 (AXW78_12540) - 2498418..2498981 (-) 564 WP_231122444.1 complement C1q domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10211.89 Da        Isoelectric Point: 5.1799

>NTDB_id=170190 AXW78_RS12510 WP_061884209.1 2494176..2494454(+) (abrB) [Bacillus thuringiensis strain Bt185]
MKNIGVARKVEELGRVVIPVELRRTLGIVEGTALDFHVEGENIVLRKYEKSCFVTGEVSETNIELLDGRMFLSKEGAIEL
LDLIQKSGMAHA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=170190 AXW78_RS12510 WP_061884209.1 2494176..2494454(+) (abrB) [Bacillus thuringiensis strain Bt185]
ATGAAAAACATAGGTGTTGCAAGAAAAGTGGAAGAGCTAGGTCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGTACGGCACTAGATTTTCATGTTGAGGGTGAAAACATTGTTCTAAGAAAATATGAAAAGTCATGCTTTG
TAACGGGTGAAGTTTCTGAAACCAACATAGAGTTGCTAGATGGGCGAATGTTTTTAAGCAAGGAAGGGGCAATTGAATTA
CTGGATCTTATTCAGAAGAGTGGGATGGCACATGCCTAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(52-86)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.322

94.565

0.533

Multiple sequence alignment